Back to Workflows build report for BioC 3.20

This page was generated on 2024-06-14 16:30 -0400 (Fri, 14 Jun 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" 4679
palomino4Windows Server 2022 Datacenterx644.4.0 RC (2024-04-16 r86468 ucrt) -- "Puppy Cup" 4414
lconwaymacOS 12.7.1 Montereyx86_644.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" 4394
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 11/30HostnameOS / ArchINSTALLBUILD
ExpressionNormalizationWorkflow 1.31.0  (landing page)
Karthikeyan Murugesan
Snapshot Date: 2024-06-14 12:45 -0400 (Fri, 14 Jun 2024)
git_url: https://git.bioconductor.org/packages/ExpressionNormalizationWorkflow
git_branch: devel
git_last_commit: b80ed60
git_last_commit_date: 2024-04-30 10:13:06 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK  


INSTALL results for ExpressionNormalizationWorkflow on palomino4

To the developers/maintainers of the ExpressionNormalizationWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ExpressionNormalizationWorkflow
Version: 1.31.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL ExpressionNormalizationWorkflow
StartedAt: 2024-06-14 13:02:54 -0400 (Fri, 14 Jun 2024)
EndedAt: 2024-06-14 13:04:18 -0400 (Fri, 14 Jun 2024)
EllapsedTime: 83.5 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL ExpressionNormalizationWorkflow
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* installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library'
* installing *source* package 'ExpressionNormalizationWorkflow' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow'
Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow'
** help
Warning: ExpressionNormalizationWorkflow-package.Rd:29: All text must be in a section
Warning: ExpressionNormalizationWorkflow-package.Rd:30: All text must be in a section
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow'
Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'Biobase::rowMedians' by 'matrixStats::rowMedians' when loading 'ExpressionNormalizationWorkflow'
Warning: replacing previous import 'Biobase::anyMissing' by 'matrixStats::anyMissing' when loading 'ExpressionNormalizationWorkflow'
** testing if installed package keeps a record of temporary installation path
* DONE (ExpressionNormalizationWorkflow)