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This page was generated on 2024-09-17 11:37 -0400 (Tue, 17 Sep 2024).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4445
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4450
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4483
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4430
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2061/2258HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
supraHex 1.43.0  (landing page)
Hai Fang
Snapshot Date: 2024-09-16 14:00 -0400 (Mon, 16 Sep 2024)
git_url: https://git.bioconductor.org/packages/supraHex
git_branch: devel
git_last_commit: 7c4793e
git_last_commit_date: 2024-04-30 10:33:03 -0400 (Tue, 30 Apr 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  


CHECK results for supraHex on teran2

To the developers/maintainers of the supraHex package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/supraHex.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: supraHex
Version: 1.43.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings supraHex_1.43.0.tar.gz
StartedAt: 2024-09-17 07:25:04 -0400 (Tue, 17 Sep 2024)
EndedAt: 2024-09-17 07:25:51 -0400 (Tue, 17 Sep 2024)
EllapsedTime: 47.0 seconds
RetCode: 0
Status:   OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings supraHex_1.43.0.tar.gz
###
##############################################################################
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* using log directory ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/supraHex.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
    GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.43.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

supraHex.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL supraHex
###
##############################################################################
##############################################################################


* installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’
* installing *source* package ‘supraHex’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (supraHex)

Tests output


Example timings

supraHex.Rcheck/supraHex-Ex.timings

nameusersystemelapsed
sBMH0.0390.0060.046
sCompReorder1.5140.0301.545
sDistance0.1690.0020.171
sDmat0.1850.0000.186
sDmatCluster0.2470.0000.249
sDmatMinima0.1860.0020.188
sHexDist0.0040.0000.005
sHexGrid0.0000.0010.001
sHexGridVariant0.0000.0010.001
sHexPolygon0.0510.0000.051
sInitial0.0040.0000.004
sMapOverlay0.2100.0070.217
sNeighAny0.0050.0010.007
sNeighDirect0.0050.0000.005
sPipeline000
sTopology0.0260.0010.026
sTrainBatch0.0280.0000.028
sTrainSeq0.2060.0010.209
sTrainology0.0050.0000.005
sWriteData0.4540.0290.482
visColoralpha0.0030.0000.002
visColorbar0.0130.0000.013
visColormap0.0020.0000.001
visCompReorder2.0960.0462.142
visDmatCluster000
visDmatHeatmap000
visHeatmap0.0550.0000.057
visHeatmapAdv0.2220.0030.225
visHexAnimate0.0010.0000.001
visHexBarplot0.4680.0120.480
visHexComp0.1700.0030.172
visHexGrid0.1670.0020.169
visHexMapping0.8490.0150.865
visHexMulComp0.6180.0140.632
visHexPattern0.9210.0280.948
visKernels0.0060.0010.007
visTreeBSclust0.0010.0000.000
visTreeBootstrap000
visVp0.0090.0010.010