Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-07-16 11:39 -0400 (Tue, 16 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4677 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4416 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4393 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4373 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1845/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
scHOT 1.17.0 (landing page) Shila Ghazanfar
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the scHOT package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/scHOT.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: scHOT |
Version: 1.17.0 |
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:scHOT.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings scHOT_1.17.0.tar.gz |
StartedAt: 2024-07-16 03:27:24 -0400 (Tue, 16 Jul 2024) |
EndedAt: 2024-07-16 03:33:15 -0400 (Tue, 16 Jul 2024) |
EllapsedTime: 351.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: scHOT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:scHOT.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings scHOT_1.17.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/scHOT.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘scHOT/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘scHOT’ version ‘1.17.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘scHOT’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed scHOT 23.361 0.244 23.605 scHOT_estimatePvalues 22.429 0.104 22.532 scHOT_performPermutationTest 22.371 0.104 22.475 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
scHOT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL scHOT ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘scHOT’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scHOT)
scHOT.Rcheck/scHOT-Ex.timings
name | user | system | elapsed | |
params-set | 0.270 | 0.068 | 0.339 | |
plotColouredExpression | 0.955 | 0.057 | 1.011 | |
plotHigherOrderSequence | 2.068 | 0.028 | 2.097 | |
positionColData-set | 0.135 | 0.000 | 0.136 | |
positionType-set | 0.137 | 0.000 | 0.137 | |
scHOT | 23.361 | 0.244 | 23.605 | |
scHOT_addTestingScaffold | 0.152 | 0.012 | 0.164 | |
scHOT_buildFromMatrix | 0.141 | 0.016 | 0.156 | |
scHOT_buildFromSCE | 0.404 | 0.000 | 0.405 | |
scHOT_calculateGlobalHigherOrderFunction | 0.198 | 0.000 | 0.197 | |
scHOT_calculateHigherOrderTestStatistics | 0.458 | 0.004 | 0.461 | |
scHOT_estimatePvalues | 22.429 | 0.104 | 22.532 | |
scHOT_output-set | 0.144 | 0.004 | 0.148 | |
scHOT_performPermutationTest | 22.371 | 0.104 | 22.475 | |
scHOT_setPermutationScaffold | 0.191 | 0.012 | 0.203 | |
scHOT_setWeightMatrix | 0.182 | 0.012 | 0.193 | |
scHOT_stripOutput | 0.151 | 0.000 | 0.152 | |
spatialWeightMatrix | 0.002 | 0.000 | 0.003 | |
testingScaffold-set | 0.148 | 0.000 | 0.149 | |
thin | 0.005 | 0.003 | 0.010 | |
trajectoryWeightMatrix | 0.003 | 0.000 | 0.003 | |
weightMatrix-set | 0.275 | 0.004 | 0.278 | |
weightedPearson | 0.001 | 0.000 | 0.000 | |
weightedSpearman | 0.000 | 0.000 | 0.001 | |
weightedVariance | 0 | 0 | 0 | |
weightedZIKendall | 0.001 | 0.000 | 0.001 | |
weightedZISpearman | 0.000 | 0.000 | 0.001 | |