Multiple platform build/check report for BioC 3.20 - BUILD results for maftools on palomino8

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4703
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4440
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4472
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4420
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4413
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for maftools on palomino8

To the developers/maintainers of the maftools package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maftools.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: maftools

Version: 2.21.0

Command: chmod a+r maftools -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maftools

StartedAt: 2024-08-14 19:20:27 -0400 (Wed, 14 Aug 2024)

EndedAt: 2024-08-14 19:23:53 -0400 (Wed, 14 Aug 2024)

EllapsedTime: 205.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r maftools -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data maftools
###
##############################################################################
##############################################################################


* checking for file 'maftools/DESCRIPTION' ... OK
* preparing 'maftools':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'cancer_hotspots.Rmd' using rmarkdown
--- finished re-building 'cancer_hotspots.Rmd'

--- re-building 'cnv_analysis.Rmd' using rmarkdown
--- finished re-building 'cnv_analysis.Rmd'

--- re-building 'maftools.Rmd' using rmarkdown
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "axes" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "axes" is not a graphical parameter
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  "axes" is not a graphical parameter

Quitting from lines 832-834 [tcgaAvailable] (maftools.Rmd)
Error: processing vignette 'maftools.Rmd' failed with diagnostics:
cannot open URL 'https://github.com/PoisonAlien/TCGAmutations/raw/master/inst/extdata/cohorts.txt'
--- failed re-building 'maftools.Rmd'

--- re-building 'oncoplots.Rmd' using rmarkdown
--- finished re-building 'oncoplots.Rmd'

SUMMARY: processing the following file failed:
  'maftools.Rmd'

Error: Vignette re-building failed.
Execution halted