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This page was generated on 2024-08-15 11:39 -0400 (Thu, 15 Aug 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4703
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4440
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4472
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4420
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4413
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 447/2255HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cqn 1.51.0  (landing page)
Kasper Daniel Hansen
Snapshot Date: 2024-08-14 14:00 -0400 (Wed, 14 Aug 2024)
git_url: https://git.bioconductor.org/packages/cqn
git_branch: devel
git_last_commit: 46d54ee
git_last_commit_date: 2024-04-30 10:24:46 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped


BUILD results for cqn on nebbiolo2

To the developers/maintainers of the cqn package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cqn.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: cqn
Version: 1.51.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 cqn
StartedAt: 2024-08-14 16:51:46 -0400 (Wed, 14 Aug 2024)
EndedAt: 2024-08-14 16:51:58 -0400 (Wed, 14 Aug 2024)
EllapsedTime: 12.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 cqn
###
##############################################################################
##############################################################################


* checking for file ‘cqn/DESCRIPTION’ ... OK
* preparing ‘cqn’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cqn.Rnw’ using Sweave
Loading required package: mclust
Package 'mclust' version 6.1.1
Type 'citation("mclust")' for citing this R package in publications.
Loading required package: nor1mix
Loading required package: preprocessCore
Loading required package: splines
Loading required package: quantreg
Loading required package: SparseM
Warning in norMix(mu = mix.param$mean, sig2 = mix.param$variance$sigmasq,  :
  The use of 'sig2' is deprecated; do specify 'sigma' (= sqrt(sig2)) instead
Loading required package: limma

Attaching package: ‘limma’

The following object is masked from ‘package:mclust’:

    logsumexp


Error: processing vignette 'cqn.Rnw' failed with diagnostics:
 chunk 19 
Error in decideTestsDGE(elrt.cqn) : 
  could not find function "decideTestsDGE"

--- failed re-building ‘cqn.Rnw’

SUMMARY: processing the following file failed:
  ‘cqn.Rnw’

Error: Vignette re-building failed.
Execution halted