| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-08-15 11:47 -0400 (Thu, 15 Aug 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4420 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4413 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2173/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TSCAN 1.43.1 (landing page) Zhicheng Ji
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | ERROR | OK | ERROR | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | ERROR | OK | ERROR | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | ERROR | OK | ERROR | OK | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | ERROR | OK | ERROR | OK | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | ERROR | OK | ERROR | ||||||||||
|
To the developers/maintainers of the TSCAN package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TSCAN.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: TSCAN |
| Version: 1.43.1 |
| Command: /home/biocbuild/R/R/bin/R CMD check --install=check:TSCAN.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings TSCAN_1.43.1.tar.gz |
| StartedAt: 2024-08-15 10:06:56 -0000 (Thu, 15 Aug 2024) |
| EndedAt: 2024-08-15 10:07:00 -0000 (Thu, 15 Aug 2024) |
| EllapsedTime: 4.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: TSCAN.Rcheck |
| Warnings: NA |
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD check --install=check:TSCAN.install-out.txt --library=/home/biocbuild/R/R/site-library --no-vignettes --timings TSCAN_1.43.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/TSCAN.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-unknown-linux-gnu
* R was compiled by
gcc (GCC) 12.2.1 20220819 (openEuler 12.2.1-14)
GNU Fortran (GCC) 10.3.1
* running under: openEuler 22.03 (LTS-SP1)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘TSCAN/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TSCAN’ version ‘1.43.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TSCAN’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.20-bioc/meat/TSCAN.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.20-bioc/meat/TSCAN.Rcheck/00check.log’
for details.
TSCAN.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD INSTALL TSCAN ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/R/R-4.4.1/site-library’ * installing *source* package ‘TSCAN’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes Warning in file(con, "w") : cannot open file '/home/biocbuild/R/R-4.4.1/site-library/00LOCK-TSCAN/00new/TSCAN/doc/index.html': No such file or directory Error in file(con, "w") : cannot open the connection ERROR: installing vignettes failed * removing ‘/home/biocbuild/R/R-4.4.1/site-library/TSCAN’ * restoring previous ‘/home/biocbuild/R/R-4.4.1/site-library/TSCAN’