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This page was generated on 2024-08-15 11:47 -0400 (Thu, 15 Aug 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4703
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4440
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4472
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4420
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4413
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1992/2255HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SpatialFeatureExperiment 1.7.1  (landing page)
Lambda Moses
Snapshot Date: 2024-08-14 14:00 -0400 (Wed, 14 Aug 2024)
git_url: https://git.bioconductor.org/packages/SpatialFeatureExperiment
git_branch: devel
git_last_commit: 1870779
git_last_commit_date: 2024-08-07 17:30:47 -0400 (Wed, 07 Aug 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for SpatialFeatureExperiment on kunpeng2

To the developers/maintainers of the SpatialFeatureExperiment package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SpatialFeatureExperiment.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: SpatialFeatureExperiment
Version: 1.7.1
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SpatialFeatureExperiment
StartedAt: 2024-08-15 01:32:56 -0000 (Thu, 15 Aug 2024)
EndedAt: 2024-08-15 01:34:44 -0000 (Thu, 15 Aug 2024)
EllapsedTime: 108.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data SpatialFeatureExperiment
###
##############################################################################
##############################################################################


* checking for file ‘SpatialFeatureExperiment/DESCRIPTION’ ... OK
* preparing ‘SpatialFeatureExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SFE.Rmd’ using rmarkdown

Quitting from lines 52-58 [setup] (SFE.Rmd)
Error: processing vignette 'SFE.Rmd' failed with diagnostics:
package or namespace load failed for 'RBioFormats':
 .onLoad failed in loadNamespace() for 'rJava', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/home/biocbuild/R/R-4.4.1/site-library/rJava/libs/rJava.so':
  libjvm.so: cannot open shared object file: No such file or directory
--- failed re-building ‘SFE.Rmd’

SUMMARY: processing the following file failed:
  ‘SFE.Rmd’

Error: Vignette re-building failed.
Execution halted