Mustafa Erhan Ozer
| Snapshot Date: 2024-09-11 14:00 -0400 (Wed, 11 Sep 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: a10cc82 |
| git_last_commit_date: 2024-08-30 17:33:50 -0400 (Fri, 30 Aug 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-09-12 11:41 -0400 (Thu, 12 Sep 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4713 |
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4450 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4483 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4430 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4428 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2070/2258 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.5.5 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.5.5 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.5.5.tar.gz |
| StartedAt: 2024-09-12 03:43:15 -0400 (Thu, 12 Sep 2024) |
| EndedAt: 2024-09-12 03:48:59 -0400 (Thu, 12 Sep 2024) |
| EllapsedTime: 343.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.5.5.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.5.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 6338,1352,23600,268,2161,6462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5207,2538,4118,84706,55753,7919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 89874,1585,81033,197131,3312,3458
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 811,104,7252,2487,4720,6999
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1798,1589,104,4035,1950,2628
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51116,6403,9997,186,55768,5091
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3630,64131,477,249,4282,51649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2786,2247,389692,4973,7030,7054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3703,55034,1608,133396,3791,27429
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100131801,2984,255231,26517,56848,7287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2542,10382,27141,6696,23369,54896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5091,7275,79949,57570,5584,51004
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 253559,6522,2524,5476,5261,5590
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1329,54344,389,7157,10686,7407
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5367,8932,11095,10643,55750,6339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4925,22978,9380,80347,4282,6403
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 488,55937,55005,6934,169026,2495
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1401,4720,2787,51052,28958,55858
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 644974,857,2542,64919,63874,5445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3339,55750,801,2695,56052,293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23038,5330,5443,1116,1595,4879
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7466,563,3992,4976,25974,4942
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6716,3685,2919,5837,488,3630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2805,5192,5826,2949,10221,84275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51081,91949,5805,26191,79661,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2158,492,3172,9945,5239,10243
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55331,593,210,8818,2147,208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4656,2702,55278,4688,158,57620
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84947,3357,92667,1968,3551,5580
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7422,6522,6569,3663,54805,6897
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 114814,3309,6891,5313,22797,126328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 32,2053,160287,7345,10524,6319
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5467,26521,6445,5286,3087,885
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2688,5122,10221,5241,537,10991
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6774,2582,101180976,56919,8722,5740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100130015,4286,4790,104,1270,5236
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3507,27010,5594,92609,2271,5644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5241,3783,8813,2314,10935,350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51004,2778,5443,54675,4143,9056
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3291,55970,1200,7386,10383,84693
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9779,6897,1815,376497,2034,5230
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3290,56652,1493,5538,389692,3630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1843,2157,2260,121268,126328,594
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7025,275,11231,5236,406,2314
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2243,10537,4828,2052,35,2260
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 335,87178,64601,23462,51206,728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 229,3295,54567,55644,3174,7372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55034,779,5096,54798,7038,5621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3703,793,7036,4144,1491,338328
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2053,2693,1582,79731,56729,1022
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2778,316,292,7056,22845,5501
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388,4925,57128,7372,4760,5805
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2695,123,2158,100529063,56945,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2804,100128525,28958,161247,3710,5723
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 407011,22797,200205,1435,256471,134
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11095,6522,4313,22933,4126,292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51738,56729,1234,517,1019,26291
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3638,4695,79001,4023,55270,122961
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8803,3062,6382,7422,407009,3658
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124454,255738,5744,2937,26088,2767
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,6811,1312,253943,27235,5745
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3934,5315,90480,23753,355,347
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 490,7098,1571,664,4143,405
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 345,54575,54576,9377,6505,3054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 462,7879,119559,79587,142,1444
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6514,6389,5277,8802,169792,9759
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23462,216,5096,26191,868,6938
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9507,1737,11254,5286,7275,10221
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 875,389,2628,3875,153642,57048
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1718,1312,2180,11231,8879,1992
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2998,51611,55065,231,407021,2888
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4886,3934,1543,6342,29960,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8942,4854,4153,5837,3087,3158
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4282,493,7515,7040,6347,125988
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9968,54802,581,84340,1230,3551
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 779,6579,585,54658,728,1621
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3291,51119,706,8862,8202,8462
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6774,10269,3117,84705,80339,596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4728,55270,3158,2115,3115,2791
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10116,84239,3920,2581,6263,6341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2702,5331,6716,10616,3779,63892
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 842,130589,26521,587,100303755,558
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6772,203068,2590,51176,64116,4351
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56623,4722,344,56729,9968,23556
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6515,2348,3291,6324,131118,84275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54798,1346,842,80347,2108,56302
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3930,2395,5241,197131,6339,5195
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2694,26119,518,6565,57511,492
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3458,8567,26227,60528,7941,1363
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 388,6492,6182,113235,3600,29929
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8665,5080,10195,4547,401,1363
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 653509,5193,55750,587,434,9672
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64788,3141,3685,18,9692,4128
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23369,1185,9415,149461,3954,5313
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4688,3033,1355,3357,3119,8309
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1347,79949,7098,10643,161247,5295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 129787,3586,656,2835,79585,2919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 90865,4973,7466,6548,26762,539
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,23400,148979,5901,8651,1353
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6833,3115,9971,133522,137682,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8431,686,212,3658,2693,389692
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7942,5515,217,3155,284958,284184
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5507,5367,10383,6354,5160,265
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23038,9415,2740,5571,3418,9409
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2110,5825,4726,3939,54539,2109
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6821,83854,6374,6403,1806,57107
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 37,26119,4015,5447,5250,1471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2653,3480,644974,9054,6789,8799
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6515,3091,57620,2790,5826,3562
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9479,6248,6341,169026,3980,4035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3684,1594,51128,5256,26191,3899
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55283,959,55343,29881,1968,10159
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6390,5409,7515,5442,2632,1601
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3651,6811,7841,5702,2683,23163
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4760,54567,5428,6535,665,790955
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
113.780 2.014 115.920
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.669 | 0.079 | 4.094 | |