Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-06-29 17:11 -0400 (Sat, 29 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 RC (2024-04-16 r86468) -- "Puppy Cup" | 4693 |
palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4408 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4407 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 RC (2024-06-06 r86719) -- "Race for Your Life" | 4356 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4407 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1308/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MsBackendRawFileReader 1.11.3 (landing page) Christian Panse
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | ERROR | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | ERROR | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | ||||||||||
To the developers/maintainers of the MsBackendRawFileReader package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsBackendRawFileReader.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MsBackendRawFileReader |
Version: 1.11.3 |
Command: C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MsBackendRawFileReader.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MsBackendRawFileReader_1.11.3.tar.gz |
StartedAt: 2024-06-29 00:42:35 -0400 (Sat, 29 Jun 2024) |
EndedAt: 2024-06-29 00:47:24 -0400 (Sat, 29 Jun 2024) |
EllapsedTime: 289.3 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: MsBackendRawFileReader.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MsBackendRawFileReader.install-out.txt --library=C:\Users\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings MsBackendRawFileReader_1.11.3.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.20-bioc/meat/MsBackendRawFileReader.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'MsBackendRawFileReader/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MsBackendRawFileReader' version '1.11.3' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'MsBackendRawFileReader' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking whether startup messages can be suppressed ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed ioBenchmark 7.39 1.83 47.30 MsBackendRawFileReader 1.01 0.14 33.81 MsBackendRawFileReader-class 0.82 0.07 10.97 hidden_aliases 0.21 0.03 9.48 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' ERROR Running the tests in 'tests/testthat.R' failed. Last 13 lines of output: ── Skipped tests (1) ─────────────────────────────────────────────────────────── • empty test (1): 'test_spectra_variables.R:262:1' ── Failed tests ──────────────────────────────────────────────────────────────── Failure ('test_peaks_variables.R:16:5'): peaksData columns and peaksVariables match colnames(res[[1L]]) not equal to peaksVariables(be). Lengths differ: 5 is not 2 Failure ('test_spectra_variables.R:205:5'): peaksData colnames(m) not equal to c("mz", "intensity"). Lengths differ: 5 is not 2 [ FAIL 2 | WARN 0 | SKIP 1 | PASS 2381 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 ERROR See 'C:/Users/biocbuild/bbs-3.20-bioc/meat/MsBackendRawFileReader.Rcheck/00check.log' for details.
MsBackendRawFileReader.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL MsBackendRawFileReader ### ############################################################################## ############################################################################## * installing to library 'C:/Users/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'MsBackendRawFileReader' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsBackendRawFileReader)
MsBackendRawFileReader.Rcheck/tests/testthat.Rout.fail
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library("testthat") > library("MsBackendRawFileReader") Loading required package: Spectra Loading required package: S4Vectors Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply, union, unique, unsplit, which.max, which.min Attaching package: 'S4Vectors' The following object is masked from 'package:utils': findMatches The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: BiocParallel Loading required package: ProtGenerics Attaching package: 'ProtGenerics' The following object is masked from 'package:stats': smooth > library("Spectra") > > > sample_raw_file <- file.path(system.file(package = "rawrr"), + 'extdata', 'sample.raw') > > sample_mzXML_file <- file.path(path.package(package = 'MsBackendRawFileReader'), + 'extdata', 'sample.mzXML') > > > sample_raw <- backendInitialize(MsBackendRawFileReader::MsBackendRawFileReader(), files = sample_raw_file) > > > #sample_mzr <- backendInitialize(MsBackendMzR(), files = sample_mzXML_file) > > > mgf_file <- file.path(system.file(package = "MsBackendRawFileReader"), + 'extdata', '3159619b11ed_4590_9594.mgf') > > > rv <- lapply(1:2, function(x){ + file.copy(from = sample_raw_file, to = tempfile(fileext='.raw'))}) > > > register(SnowParam(workers = 1, type = "SOCK") , default = TRUE); > sample_raw_2 <- backendInitialize(MsBackendRawFileReader(), + files = file.path(tempdir(), + list.files(path = tempdir(), pattern = 'raw$'))) > > > test_check("MsBackendRawFileReader") [ FAIL 0 | WARN 1 | SKIP 2 | PASS 21 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • isFALSE(file.exists(sample_mzXML_file)) is TRUE (1): 'test_MsBackendMzR_MsBackendRawFileReader.R:1:1' • isFALSE(require(MsBackendRawMgf)) is TRUE (1): 'test_top_n_mgf.R:1:1' [ FAIL 0 | WARN 1 | SKIP 2 | PASS 21 ] > > > be <- Spectra::backendInitialize(MsBackendRawFileReader::MsBackendRawFileReader(), + files = c(sample_raw_file)) > > ## Run the MsBackend spectra variable test suite > test_suite <- system.file("test_backends", "test_MsBackend", + package = "Spectra") > > #res <- test_file(paste0(test_suite, "/test_spectra_variables.R"), > # reporter = check_reporter(), stop_on_failure = TRUE) > > > ## Run the whole suite. > res <- test_dir(test_suite, stop_on_failure = TRUE) ✔ | F W S OK | Context ⠏ | 0 | peaks_variables ⠙ | 2 | peaks_variables ⠸ | 1 3 | peaks_variables ✖ | 1 3 | peaks_variables [5.2s] ──────────────────────────────────────────────────────────────────────────────── Failure ('test_peaks_variables.R:16:5'): peaksData columns and peaksVariables match colnames(res[[1L]]) not equal to peaksVariables(be). Lengths differ: 5 is not 2 ──────────────────────────────────────────────────────────────────────────────── ⠏ | 0 | spectra_subsetting ⠋ | 1 | spectra_subsetting ⠦ | 17 | spectra_subsetting ⠏ | 30 | spectra_subsetting ⠴ | 46 | spectra_subsetting ⠋ | 61 | spectra_subsetting ⠦ | 77 | spectra_subsetting ⠼ | 95 | spectra_subsetting ⠇ | 109 | spectra_subsetting ⠼ | 125 | spectra_subsetting ⠇ | 139 | spectra_subsetting ⠸ | 154 | spectra_subsetting ⠇ | 169 | spectra_subsetting ⠸ | 184 | spectra_subsetting ⠇ | 199 | spectra_subsetting ⠴ | 216 | spectra_subsetting ⠹ | 233 | spectra_subsetting ⠦ | 247 | spectra_subsetting ⠙ | 262 | spectra_subsetting ⠸ | 274 | spectra_subsetting ⠏ | 290 | spectra_subsetting ⠼ | 305 | spectra_subsetting ⠙ | 322 | spectra_subsetting ⠦ | 337 | spectra_subsetting ⠏ | 350 | spectra_subsetting ⠏ | 370 | spectra_subsetting ⠴ | 386 | spectra_subsetting ⠹ | 403 | spectra_subsetting ⠴ | 416 | spectra_subsetting ⠋ | 431 | spectra_subsetting ⠼ | 445 | spectra_subsetting ⠏ | 460 | spectra_subsetting ⠼ | 475 | spectra_subsetting ⠦ | 487 | spectra_subsetting ⠙ | 502 | spectra_subsetting ⠦ | 517 | spectra_subsetting ⠹ | 533 | spectra_subsetting ⠦ | 547 | spectra_subsetting ⠙ | 562 | spectra_subsetting ⠏ | 580 | spectra_subsetting ⠙ | 592 | spectra_subsetting ⠼ | 605 | spectra_subsetting ⠦ | 617 | spectra_subsetting ⠸ | 634 | spectra_subsetting ⠇ | 649 | spectra_subsetting ⠼ | 665 | spectra_subsetting ⠋ | 681 | spectra_subsetting ⠸ | 694 | spectra_subsetting ⠇ | 709 | spectra_subsetting ⠙ | 722 | spectra_subsetting ⠇ | 739 | spectra_subsetting ⠸ | 754 | spectra_subsetting ⠙ | 772 | spectra_subsetting ⠼ | 785 | spectra_subsetting ⠏ | 800 | spectra_subsetting ⠸ | 814 | spectra_subsetting ⠴ | 826 | spectra_subsetting ⠋ | 841 | spectra_subsetting ⠴ | 856 | spectra_subsetting ⠋ | 871 | spectra_subsetting ⠴ | 886 | spectra_subsetting ⠧ | 898 | spectra_subsetting ⠹ | 913 | spectra_subsetting ⠹ | 923 | spectra_subsetting ⠦ | 937 | spectra_subsetting ⠙ | 952 | spectra_subsetting ⠸ | 964 | spectra_subsetting ⠇ | 979 | spectra_subsetting ⠸ | 994 | spectra_subsetting ⠇ | 1009 | spectra_subsetting ⠸ | 1024 | spectra_subsetting ⠴ | 1036 | spectra_subsetting ⠸ | 1054 | spectra_subsetting ⠦ | 1067 | spectra_subsetting ⠸ | 1084 | spectra_subsetting ⠇ | 1099 | spectra_subsetting ⠇ | 1109 | spectra_subsetting ⠋ | 1121 | spectra_subsetting ⠸ | 1134 | spectra_subsetting ⠏ | 1150 | spectra_subsetting ⠼ | 1165 | spectra_subsetting ⠋ | 1181 | spectra_subsetting ⠧ | 1198 | spectra_subsetting ⠹ | 1213 | spectra_subsetting ⠇ | 1229 | spectra_subsetting ⠹ | 1243 | spectra_subsetting ⠇ | 1259 | spectra_subsetting ⠹ | 1273 | spectra_subsetting ⠇ | 1289 | spectra_subsetting ⠹ | 1303 | spectra_subsetting ⠇ | 1319 | spectra_subsetting ⠴ | 1336 | spectra_subsetting ⠇ | 1349 | spectra_subsetting ⠴ | 1366 | spectra_subsetting ⠧ | 1378 | spectra_subsetting ⠸ | 1394 | spectra_subsetting ⠧ | 1408 | spectra_subsetting ⠹ | 1423 | spectra_subsetting ⠇ | 1439 | spectra_subsetting ⠸ | 1454 | spectra_subsetting ⠇ | 1469 | spectra_subsetting ⠹ | 1483 | spectra_subsetting ⠋ | 1501 | spectra_subsetting ⠹ | 1513 | spectra_subsetting ⠧ | 1528 | spectra_subsetting ⠹ | 1543 | spectra_subsetting ⠋ | 1561 | spectra_subsetting ⠴ | 1576 | spectra_subsetting ⠹ | 1593 | spectra_subsetting ⠇ | 1609 | spectra_subsetting ⠦ | 1627 | spectra_subsetting ⠼ | 1645 | spectra_subsetting ⠹ | 1663 | spectra_subsetting ⠧ | 1678 | spectra_subsetting ⠏ | 1690 | spectra_subsetting ⠼ | 1705 | spectra_subsetting ⠏ | 1720 | spectra_subsetting ⠦ | 1727 | spectra_subsetting ⠇ | 1729 | spectra_subsetting ⠙ | 1732 | spectra_subsetting ⠼ | 1735 | spectra_subsetting ⠦ | 1737 | spectra_subsetting ⠏ | 1740 | spectra_subsetting ⠹ | 1743 | spectra_subsetting ⠴ | 1746 | spectra_subsetting ⠇ | 1749 | spectra_subsetting ⠙ | 1752 | spectra_subsetting ⠼ | 1755 | spectra_subsetting ⠧ | 1758 | spectra_subsetting ⠋ | 1761 | spectra_subsetting ⠸ | 1764 | spectra_subsetting ⠦ | 1767 | spectra_subsetting ⠏ | 1770 | spectra_subsetting ⠙ | 1772 | spectra_subsetting ⠼ | 1775 | spectra_subsetting ⠧ | 1778 | spectra_subsetting ⠏ | 1780 | spectra_subsetting ⠹ | 1783 | spectra_subsetting ⠴ | 1786 | spectra_subsetting ⠧ | 1788 | spectra_subsetting ⠋ | 1791 | spectra_subsetting ⠸ | 1794 | spectra_subsetting ⠦ | 1797 | spectra_subsetting ⠏ | 1800 | spectra_subsetting ⠹ | 1803 | spectra_subsetting ⠴ | 1806 | spectra_subsetting ⠇ | 1809 | spectra_subsetting ⠋ | 1811 | spectra_subsetting ⠸ | 1814 | spectra_subsetting ⠦ | 1817 | spectra_subsetting ⠇ | 1819 | spectra_subsetting ⠙ | 1822 | spectra_subsetting ⠸ | 1824 | spectra_subsetting ⠦ | 1827 | spectra_subsetting ⠏ | 1830 | spectra_subsetting ⠹ | 1833 | spectra_subsetting ⠴ | 1836 | spectra_subsetting ⠧ | 1838 | spectra_subsetting ⠋ | 1841 | spectra_subsetting ⠸ | 1844 | spectra_subsetting ⠦ | 1847 | spectra_subsetting ⠏ | 1850 | spectra_subsetting ⠹ | 1853 | spectra_subsetting ⠴ | 1856 | spectra_subsetting ⠇ | 1859 | spectra_subsetting ⠙ | 1862 | spectra_subsetting ⠼ | 1865 | spectra_subsetting ⠧ | 1868 | spectra_subsetting ⠋ | 1871 | spectra_subsetting ⠸ | 1874 | spectra_subsetting ⠦ | 1877 | spectra_subsetting ⠋ | 1881 | spectra_subsetting ⠸ | 1884 | spectra_subsetting ⠦ | 1887 | spectra_subsetting ⠏ | 1890 | spectra_subsetting ⠹ | 1893 | spectra_subsetting ⠴ | 1896 | spectra_subsetting ⠇ | 1899 | spectra_subsetting ⠙ | 1902 | spectra_subsetting ⠼ | 1905 | spectra_subsetting ⠧ | 1908 | spectra_subsetting ⠋ | 1911 | spectra_subsetting ⠸ | 1914 | spectra_subsetting ⠦ | 1917 | spectra_subsetting ⠏ | 1920 | spectra_subsetting ⠹ | 1923 | spectra_subsetting ⠴ | 1926 | spectra_subsetting ⠇ | 1929 | spectra_subsetting ⠙ | 1932 | spectra_subsetting ⠼ | 1935 | spectra_subsetting ⠧ | 1938 | spectra_subsetting ⠋ | 1941 | spectra_subsetting ⠸ | 1944 | spectra_subsetting ⠦ | 1947 | spectra_subsetting ⠏ | 1950 | spectra_subsetting ⠹ | 1953 | spectra_subsetting ⠴ | 1956 | spectra_subsetting ⠇ | 1959 | spectra_subsetting ⠙ | 1962 | spectra_subsetting ⠼ | 1965 | spectra_subsetting ⠧ | 1968 | spectra_subsetting ⠋ | 1971 | spectra_subsetting ⠸ | 1974 | spectra_subsetting ⠦ | 1977 | spectra_subsetting ⠏ | 1980 | spectra_subsetting ⠸ | 1984 | spectra_subsetting ⠦ | 1987 | spectra_subsetting ⠋ | 1991 | spectra_subsetting ⠸ | 1994 | spectra_subsetting ⠧ | 1998 | spectra_subsetting ⠋ | 2001 | spectra_subsetting ⠸ | 2004 | spectra_subsetting ⠦ | 2007 | spectra_subsetting ⠏ | 2010 | spectra_subsetting ⠹ | 2013 | spectra_subsetting ⠴ | 2016 | spectra_subsetting ⠇ | 2019 | spectra_subsetting ⠹ | 2023 | spectra_subsetting ⠴ | 2026 | spectra_subsetting ⠇ | 2029 | spectra_subsetting ⠹ | 2033 | spectra_subsetting ⠴ | 2036 | spectra_subsetting ⠇ | 2039 | spectra_subsetting ⠹ | 2043 | spectra_subsetting ⠴ | 2046 | spectra_subsetting ⠇ | 2049 | spectra_subsetting ⠙ | 2052 | spectra_subsetting ⠼ | 2055 | spectra_subsetting ⠧ | 2058 | spectra_subsetting ⠋ | 2061 | spectra_subsetting ⠸ | 2064 | spectra_subsetting ⠦ | 2067 | spectra_subsetting ⠋ | 2071 | spectra_subsetting ⠸ | 2074 | spectra_subsetting ⠧ | 2078 | spectra_subsetting ⠋ | 2081 | spectra_subsetting ⠸ | 2084 | spectra_subsetting ⠦ | 2087 | spectra_subsetting ⠏ | 2090 | spectra_subsetting ⠹ | 2093 | spectra_subsetting ⠴ | 2096 | spectra_subsetting ⠇ | 2099 | spectra_subsetting ⠹ | 2103 | spectra_subsetting ⠴ | 2106 | spectra_subsetting ⠏ | 2110 | spectra_subsetting ⠹ | 2113 | spectra_subsetting ⠴ | 2116 | spectra_subsetting ⠇ | 2119 | spectra_subsetting ⠙ | 2122 | spectra_subsetting ⠼ | 2125 | spectra_subsetting ⠧ | 2128 | spectra_subsetting ⠋ | 2131 | spectra_subsetting ⠸ | 2134 | spectra_subsetting ⠦ | 2137 | spectra_subsetting ⠏ | 2140 | spectra_subsetting ⠹ | 2143 | spectra_subsetting ⠴ | 2146 | spectra_subsetting ⠇ | 2149 | spectra_subsetting ⠙ | 2152 | spectra_subsetting ⠼ | 2155 | spectra_subsetting ⠧ | 2158 | spectra_subsetting ⠋ | 2161 | spectra_subsetting ⠸ | 2164 | spectra_subsetting ⠦ | 2167 | spectra_subsetting ⠏ | 2170 | spectra_subsetting ⠹ | 2173 | spectra_subsetting ⠴ | 2176 | spectra_subsetting ⠇ | 2179 | spectra_subsetting ⠹ | 2183 | spectra_subsetting ⠴ | 2186 | spectra_subsetting ⠇ | 2189 | spectra_subsetting ⠙ | 2192 | spectra_subsetting ⠴ | 2196 | spectra_subsetting ⠇ | 2199 | spectra_subsetting ⠙ | 2202 | spectra_subsetting ⠼ | 2205 | spectra_subsetting ⠧ | 2208 | spectra_subsetting ⠙ | 2212 | spectra_subsetting ⠼ | 2215 | spectra_subsetting ⠧ | 2218 | spectra_subsetting ⠋ | 2221 | spectra_subsetting ⠸ | 2224 | spectra_subsetting ⠧ | 2228 | spectra_subsetting ⠋ | 2231 | spectra_subsetting ⠸ | 2234 | spectra_subsetting ⠦ | 2237 | spectra_subsetting ⠏ | 2240 | spectra_subsetting ⠙ | 2242 | spectra_subsetting ⠴ | 2246 | spectra_subsetting ⠇ | 2249 | spectra_subsetting ⠋ | 2251 | spectra_subsetting ⠸ | 2254 | spectra_subsetting ⠦ | 2257 | spectra_subsetting ⠏ | 2260 | spectra_subsetting ⠹ | 2263 | spectra_subsetting ⠴ | 2266 | spectra_subsetting ⠇ | 2269 | spectra_subsetting ⠙ | 2272 | spectra_subsetting ⠼ | 2275 | spectra_subsetting ⠧ | 2278 | spectra_subsetting ⠋ | 2281 | spectra_subsetting ⠼ | 2285 | spectra_subsetting ⠧ | 2288 | spectra_subsetting ⠋ | 2291 | spectra_subsetting ⠸ | 2294 | spectra_subsetting ⠧ | 2298 | spectra_subsetting ⠹ | 2303 | spectra_subsetting ⠙ | 2312 | spectra_subsetting ✔ | 2317 | spectra_subsetting [37.2s] ⠏ | 0 | spectra_variables ⠙ | 12 | spectra_variables ⠸ | 14 | spectra_variables ⠴ | 16 | spectra_variables ⠦ | 27 | spectra_variables ⠇ | 29 | spectra_variables ⠋ | 31 | spectra_variables ⠹ | 43 | spectra_variables ⠴ | 1 1 54 | spectra_variables ✖ | 1 1 61 | spectra_variables [19.7s] ──────────────────────────────────────────────────────────────────────────────── Failure ('test_spectra_variables.R:205:5'): peaksData colnames(m) not equal to c("mz", "intensity"). Lengths differ: 5 is not 2 ──────────────────────────────────────────────────────────────────────────────── ══ Results ═════════════════════════════════════════════════════════════════════ Duration: 62.0 s ── Skipped tests (1) ─────────────────────────────────────────────────────────── • empty test (1): 'test_spectra_variables.R:262:1' ── Failed tests ──────────────────────────────────────────────────────────────── Failure ('test_peaks_variables.R:16:5'): peaksData columns and peaksVariables match colnames(res[[1L]]) not equal to peaksVariables(be). Lengths differ: 5 is not 2 Failure ('test_spectra_variables.R:205:5'): peaksData colnames(m) not equal to c("mz", "intensity"). Lengths differ: 5 is not 2 [ FAIL 2 | WARN 0 | SKIP 1 | PASS 2381 ] Error: Test failures Execution halted
MsBackendRawFileReader.Rcheck/MsBackendRawFileReader-Ex.timings
name | user | system | elapsed | |
MsBackendRawFileReader-class | 0.82 | 0.07 | 10.97 | |
MsBackendRawFileReader | 1.01 | 0.14 | 33.81 | |
hidden_aliases | 0.21 | 0.03 | 9.48 | |
ioBenchmark | 7.39 | 1.83 | 47.30 | |