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This page was generated on 2024-08-15 11:40 -0400 (Thu, 15 Aug 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4703
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4440
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4472
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4420
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch644.4.1 (2024-06-14) -- "Race for Your Life" 4413
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1260/2255HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MIRit 1.1.0  (landing page)
Jacopo Ronchi
Snapshot Date: 2024-08-14 14:00 -0400 (Wed, 14 Aug 2024)
git_url: https://git.bioconductor.org/packages/MIRit
git_branch: devel
git_last_commit: 3abb821
git_last_commit_date: 2024-04-30 11:53:58 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped
palomino8Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.6.5 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    ERROR  skipped

BUILD results for MIRit on nebbiolo2

To the developers/maintainers of the MIRit package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MIRit.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: MIRit
Version: 1.1.0
Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 MIRit
StartedAt: 2024-08-14 18:18:58 -0400 (Wed, 14 Aug 2024)
EndedAt: 2024-08-14 18:20:34 -0400 (Wed, 14 Aug 2024)
EllapsedTime: 95.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 MIRit
###
##############################################################################
##############################################################################


* checking for file ‘MIRit/DESCRIPTION’ ... OK
* preparing ‘MIRit’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MIRit.Rmd’ using rmarkdown

Quitting from lines 777-779 [trackPlot] (MIRit.Rmd)
Error: processing vignette 'MIRit.Rmd' failed with diagnostics:
'snpAssociation' must be a data.frame containing the list of SNPs occurring at DE-miRNA genes. To obtain this association you can use the 'findMirnaSNPs()' function. See ?findMirnaSNPs for details.
--- failed re-building ‘MIRit.Rmd’

SUMMARY: processing the following file failed:
  ‘MIRit.Rmd’

Error: Vignette re-building failed.
Execution halted