Alex Pico
| Snapshot Date: 2024-09-01 14:00 -0400 (Sun, 01 Sep 2024) |
| git_url: https://git.bioconductor.org/packages/RCy3 |
| git_branch: RELEASE_3_19 |
| git_last_commit: ca074c6 |
| git_last_commit_date: 2024-04-30 10:46:27 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-09-03 17:37 -0400 (Tue, 03 Sep 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4758 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4495 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4473 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1706/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RCy3 2.24.0 (landing page) Alex Pico
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the RCy3 package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCy3.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: RCy3 |
| Version: 2.24.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCy3 |
| StartedAt: 2024-09-02 06:25:32 -0400 (Mon, 02 Sep 2024) |
| EndedAt: 2024-09-02 06:26:20 -0400 (Mon, 02 Sep 2024) |
| EllapsedTime: 47.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RCy3 ### ############################################################################## ############################################################################## * checking for file ‘RCy3/DESCRIPTION’ ... OK * preparing ‘RCy3’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Cancer-networks-and-data.Rmd’ using rmarkdown Error: processing vignette 'Cancer-networks-and-data.Rmd' failed with diagnostics: pandoc document conversion failed with error 11 --- failed re-building ‘Cancer-networks-and-data.Rmd’ --- re-building ‘Custom-Graphics.Rmd’ using rmarkdown --- finished re-building ‘Custom-Graphics.Rmd’ --- re-building ‘Cytoscape-and-NDEx.Rmd’ using rmarkdown --- finished re-building ‘Cytoscape-and-NDEx.Rmd’ --- re-building ‘Cytoscape-and-graphNEL.Rmd’ using rmarkdown --- finished re-building ‘Cytoscape-and-graphNEL.Rmd’ --- re-building ‘Cytoscape-and-iGraph.Rmd’ using rmarkdown --- finished re-building ‘Cytoscape-and-iGraph.Rmd’ --- re-building ‘Filtering-Networks.Rmd’ using rmarkdown --- finished re-building ‘Filtering-Networks.Rmd’ --- re-building ‘Group-nodes.Rmd’ using rmarkdown --- finished re-building ‘Group-nodes.Rmd’ --- re-building ‘Identifier-mapping.Rmd’ using rmarkdown --- finished re-building ‘Identifier-mapping.Rmd’ --- re-building ‘Importing-data.Rmd’ using rmarkdown --- finished re-building ‘Importing-data.Rmd’ --- re-building ‘Jupyter-bridge-rcy3.Rmd’ using rmarkdown --- finished re-building ‘Jupyter-bridge-rcy3.Rmd’ --- re-building ‘Network-functions-and-visualization.Rmd’ using rmarkdown --- finished re-building ‘Network-functions-and-visualization.Rmd’ --- re-building ‘Overview-of-RCy3.Rmd’ using rmarkdown --- finished re-building ‘Overview-of-RCy3.Rmd’ --- re-building ‘Phylogenetic-trees.Rmd’ using rmarkdown --- finished re-building ‘Phylogenetic-trees.Rmd’ --- re-building ‘Upgrading-existing-scripts.Rmd’ using rmarkdown --- finished re-building ‘Upgrading-existing-scripts.Rmd’ SUMMARY: processing the following file failed: ‘Cancer-networks-and-data.Rmd’ Error: Vignette re-building failed. Execution halted