Back to Mac ARM64 build report for BioC 3.18 |
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This page was generated on 2024-04-18 11:32:12 -0400 (Thu, 18 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 983/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
hyperdraw 1.54.0 (landing page) Paul Murrell
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the hyperdraw package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: hyperdraw |
Version: 1.54.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:hyperdraw.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings hyperdraw_1.54.0.tar.gz |
StartedAt: 2024-04-17 16:35:31 -0400 (Wed, 17 Apr 2024) |
EndedAt: 2024-04-17 16:36:10 -0400 (Wed, 17 Apr 2024) |
EllapsedTime: 39.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: hyperdraw.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:hyperdraw.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings hyperdraw_1.54.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/hyperdraw.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘hyperdraw/DESCRIPTION’ ... OK * this is package ‘hyperdraw’ version ‘1.54.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘hyperdraw’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘test.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
hyperdraw.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL hyperdraw ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘hyperdraw’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘graphLayout’ in package ‘hyperdraw’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hyperdraw)
hyperdraw.Rcheck/tests/test.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > > library(hyperdraw) > > # Check graph validation > > # Edges must be directed > > badgnel.1 <- new("graphNEL", + nodes=c("A", "R"), + edgeL=list( + A=list(edges="R"), + R=list(edges="A"))) > stopifnot(inherits(try(graphBPH(badgnel.1, "")), "try-error")) Error in validGraphBPH(.Object) : All edges must be between a normal node and an edge node > > # All edges must be between normal node and edge node > badgnel.2 <- new("graphNEL", + nodes=c("A", "B"), + edgeL=list( + A=list(edges="B"), + B=list(edges="A")), + edgemode="directed") > stopifnot(inherits(try(graphBPH(badgnel.2, "")), "try-error")) Error in validGraphBPH(.Object) : All edges must be between a normal node and an edge node > > # If it's a Hypergraph, all Hyperedges must be DirectedHyperedges > > require(hypergraph) Loading required package: hypergraph Loading required package: graph Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min > > badhg <- Hypergraph(c("A", "B"), list(Hyperedge(c("A", "B")))) > stopifnot(inherits(try(graphBPH(badhg)), "try-error")) Error in graphBPH(badhg) : All hyperedges must be directed hyperedges > > # Examples in man pages test simple examples that should work > > > proc.time() user system elapsed 1.068 0.110 1.166
hyperdraw.Rcheck/hyperdraw-Ex.timings
name | user | system | elapsed | |
RagraphBPH-class | 0.456 | 0.009 | 0.466 | |
graphBPH-class | 0.303 | 0.008 | 0.315 | |
graphLayout | 0.006 | 0.000 | 0.006 | |