Back to Mac ARM64 build report for BioC 3.18 |
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This page was generated on 2024-04-18 11:32:09 -0400 (Thu, 18 Apr 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson1 | macOS 13.6.1 Ventura | arm64 | 4.3.3 (2024-02-29) -- "Angel Food Cake" | 4388 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 656/2266 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
epistack 1.8.0 (landing page) DEVAILLY Guillaume
| kjohnson1 | macOS 13.6.1 Ventura / arm64 | OK | OK | OK | OK | ![]() | |||||||
To the developers/maintainers of the epistack package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: epistack |
Version: 1.8.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:epistack.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings epistack_1.8.0.tar.gz |
StartedAt: 2024-04-17 13:07:57 -0400 (Wed, 17 Apr 2024) |
EndedAt: 2024-04-17 13:11:18 -0400 (Wed, 17 Apr 2024) |
EllapsedTime: 201.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: epistack.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:epistack.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings epistack_1.8.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.18-bioc-mac-arm64/meat/epistack.Rcheck’ * using R version 4.3.3 (2024-02-29) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.6.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘epistack/DESCRIPTION’ ... OK * this is package ‘epistack’ version ‘1.8.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘epistack’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
epistack.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL epistack ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘epistack’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (epistack)
epistack.Rcheck/tests/testthat.Rout
R version 4.3.3 (2024-02-29) -- "Angel Food Cake" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: aarch64-apple-darwin20 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(epistack) > > test_check("epistack") Loading required package: stats4 Loading required package: BiocGenerics Attaching package: 'BiocGenerics' The following objects are masked from 'package:stats': IQR, mad, sd, var, xtabs The following objects are masked from 'package:base': Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union, unique, unsplit, which.max, which.min Loading required package: S4Vectors Attaching package: 'S4Vectors' The following object is masked from 'package:utils': findMatches The following objects are masked from 'package:base': I, expand.grid, unname Loading required package: IRanges Loading required package: GenomeInfoDb [ FAIL 0 | WARN 0 | SKIP 19 | PASS 13 ] ══ Skipped tests (19) ══════════════════════════════════════════════════════════ • On CRAN (19): 'test_plotAverageProfile.R:8:5', 'test_plotAverageProfile.R:12:5', 'test_plotAverageProfile.R:16:5', 'test_plotBinning.R:17:5', 'test_plotBinning.R:21:5', 'test_plotBinning.R:25:5', 'test_plotBoxMetric.R:19:5', 'test_plotBoxMetric.R:22:5', 'test_plotBoxMetric.R:25:5', 'test_plotEpistack.R:58:5', 'test_plotEpistack.R:62:5', 'test_plotEpistack.R:66:5', 'test_plotEpistack.R:70:5', 'test_plotEpistack.R:75:5', 'test_plotEpistack.R:79:5', 'test_plotEpistack.R:83:5', 'test_plotMetric.R:6:5', 'test_plotStackProfile.R:10:5', 'test_plotStackProfile.R:14:5' [ FAIL 0 | WARN 0 | SKIP 19 | PASS 13 ] > > proc.time() user system elapsed 20.799 0.828 22.375
epistack.Rcheck/epistack-Ex.timings
name | user | system | elapsed | |
GRanges2RSE | 0.210 | 0.006 | 0.217 | |
addBins | 0.198 | 0.006 | 0.205 | |
addMetricAndArrangeGRanges | 0.200 | 0.018 | 0.218 | |
addMetricAndArrangeRSE | 0.154 | 0.010 | 0.165 | |
meanColor | 0.001 | 0.000 | 0.001 | |
plotAverageProfile | 0.082 | 0.008 | 0.089 | |
plotBinning | 0.129 | 0.014 | 0.150 | |
plotBoxMetric | 0.063 | 0.006 | 0.078 | |
plotEpistack | 1.050 | 0.025 | 1.075 | |
plotMetric | 0.122 | 0.007 | 0.130 | |
plotStackProfile | 1.023 | 0.019 | 1.060 | |
plotStackProfileLegend | 0.059 | 0.004 | 0.066 | |
redimMatrix | 0.078 | 0.004 | 0.089 | |