Back to Build/check report for BioC 3.17 experimental data |
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This page was generated on 2023-10-12 14:51:35 -0400 (Thu, 12 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 109/421 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
EatonEtAlChIPseq 0.38.0 (landing page) Patrick Aboyoun
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | |||||||
To the developers/maintainers of the EatonEtAlChIPseq package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: EatonEtAlChIPseq |
Version: 0.38.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:EatonEtAlChIPseq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings EatonEtAlChIPseq_0.38.0.tar.gz |
StartedAt: 2023-10-12 11:18:02 -0400 (Thu, 12 Oct 2023) |
EndedAt: 2023-10-12 11:20:28 -0400 (Thu, 12 Oct 2023) |
EllapsedTime: 146.2 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: EatonEtAlChIPseq.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:EatonEtAlChIPseq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/site-library --timings EatonEtAlChIPseq_0.38.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-data-experiment/meat/EatonEtAlChIPseq.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: x86_64-pc-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0 * running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * checking for file ‘EatonEtAlChIPseq/DESCRIPTION’ ... OK * this is package ‘EatonEtAlChIPseq’ version ‘0.38.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘EatonEtAlChIPseq’ can be installed ... OK * checking installed package size ... NOTE installed size is 20.7Mb sub-directories of 1Mb or more: extdata 20.6Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Non-standard license specification: Artistic 2.0 Standardizable: TRUE Standardized license specification: Artistic-2.0 * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... WARNING Output for data("orcAlignsRep1", package = "EatonEtAlChIPseq"): Search path was changed Output for data("orcAlignsRep2", package = "EatonEtAlChIPseq"): Search path was changed Output for data("orcPeaksRep1", package = "EatonEtAlChIPseq"): Search path was changed Output for data("orcPeaksRep2", package = "EatonEtAlChIPseq"): Search path was changed * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed orcAligns 7.393 0.192 7.585 * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 2 NOTEs See ‘/home/biocbuild/bbs-3.17-data-experiment/meat/EatonEtAlChIPseq.Rcheck/00check.log’ for details.
EatonEtAlChIPseq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL EatonEtAlChIPseq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘EatonEtAlChIPseq’ ... ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EatonEtAlChIPseq)
EatonEtAlChIPseq.Rcheck/EatonEtAlChIPseq-Ex.timings
name | user | system | elapsed | |
orcAligns | 7.393 | 0.192 | 7.585 | |
orcPeaks | 0.185 | 0.003 | 0.189 | |