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This page was generated on 2023-01-02 09:00:21 -0500 (Mon, 02 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
palomino5Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences" 4165
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for biodbHmdb on palomino5


To the developers/maintainers of the biodbHmdb package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 180/2158HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biodbHmdb 1.5.0  (landing page)
Pierrick Roger
Snapshot Date: 2022-12-28 11:00:06 -0500 (Wed, 28 Dec 2022)
git_url: https://git.bioconductor.org/packages/biodbHmdb
git_branch: master
git_last_commit: e3ce6ec
git_last_commit_date: 2022-11-01 11:26:07 -0500 (Tue, 01 Nov 2022)
palomino5Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  

Summary

Package: biodbHmdb
Version: 1.5.0
Command: F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings biodbHmdb_1.5.0.tar.gz
StartedAt: 2022-12-28 21:58:53 -0500 (Wed, 28 Dec 2022)
EndedAt: 2022-12-28 22:00:27 -0500 (Wed, 28 Dec 2022)
EllapsedTime: 94.1 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbHmdb.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.17-bioc\R\library --no-vignettes --timings biodbHmdb_1.5.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/biodbHmdb.Rcheck'
* using R Under development (unstable) (2022-12-25 r83502 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* R was compiled by
    gcc.exe (GCC) 10.4.0
    GNU Fortran (GCC) 10.4.0
* running under: Windows Server x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... OK
* used C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'F:/biocbuild/bbs-3.17-bioc-rtools43/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.17-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c Tag.cpp -o Tag.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-tag.cpp -o test-100-tag.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/testthat/include'   -I"c:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++11 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def RcppExports.o Tag.o extractXmlEntries.o test-100-tag.o test-runner.o -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -Lc:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2022-12-25 r83502 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2022-12-28 22:00:02.492][biodb::testContext]
biodb.INFO [2022-12-28 22:00:02.494][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 22:00:02.495][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2022-12-28 22:00:02.496][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 22:00:02.497][biodb::testContext]
biodb.INFO [2022-12-28 22:00:02.499][biodb::testThat]
biodb.INFO [2022-12-28 22:00:02.500][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2022-12-28 22:00:02.501][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:02.502][biodb::testThat]
biodb.INFO [2022-12-28 22:00:02.703][biodb::testContext]
biodb.INFO [2022-12-28 22:00:02.705][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 22:00:02.706][biodb::testContext] Test context - Generic tests
biodb.INFO [2022-12-28 22:00:02.707][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 22:00:02.708][biodb::testContext]
biodb.INFO [2022-12-28 22:00:02.724][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2022-12-28 22:00:02.726][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-12-28 22:00:02.734][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 22:00:02.735][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-12-28 22:00:02.736][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-12-28 22:00:02.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.740][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-12-28 22:00:02.762][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-12-28 22:00:02.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.777][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-12-28 22:00:02.779][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-12-28 22:00:02.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.785][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-12-28 22:00:02.786][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-12-28 22:00:02.787][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-12-28 22:00:02.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.793][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-12-28 22:00:02.794][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-12-28 22:00:02.796][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-12-28 22:00:02.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.802][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-12-28 22:00:02.804][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-12-28 22:00:02.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.809][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-12-28 22:00:02.810][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-12-28 22:00:02.811][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-12-28 22:00:02.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.815][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-12-28 22:00:02.816][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-12-28 22:00:02.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.820][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-12-28 22:00:02.821][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-12-28 22:00:02.822][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-12-28 22:00:02.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.826][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-12-28 22:00:02.827][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-12-28 22:00:02.828][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-12-28 22:00:02.829][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-12-28 22:00:02.830][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-12-28 22:00:02.831][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-12-28 22:00:02.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.835][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-12-28 22:00:02.836][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-12-28 22:00:02.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.840][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-12-28 22:00:02.841][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-12-28 22:00:02.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.845][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-12-28 22:00:02.846][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-12-28 22:00:02.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.850][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-12-28 22:00:02.851][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-12-28 22:00:02.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.855][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-12-28 22:00:02.856][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-12-28 22:00:02.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.860][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-12-28 22:00:02.861][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-12-28 22:00:02.865][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-12-28 22:00:02.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.869][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-12-28 22:00:02.870][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-12-28 22:00:02.871][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-12-28 22:00:02.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:02.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:02.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:02.877][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-12-28 22:00:02.902][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:02.914][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-12-28 22:00:02.915][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.916][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:02.917][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.918][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:02.919][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:02.920][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:02.922][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 22:00:02.923][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:02.924][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.925][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-12-28 22:00:02.926][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:02.927][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:02.928][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.933][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 22:00:02.933][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 22:00:02.933][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 22:00:02.933][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 22:00:02.933][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 22:00:02.934][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:02.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:02.936][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:02.937][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:02.938][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:02.939][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:02.940][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:02.941][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:02.942][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:02.943][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:02.944][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:02.945][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:02.947][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-12-28 22:00:02.948][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:02.949][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 22:00:02.951][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.952][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:02.953][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.954][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:02.955][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:02.956][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:02.957][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 22:00:02.958][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:02.959][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.960][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-12-28 22:00:02.962][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:02.963][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:02.964][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.965][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 22:00:02.965][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 22:00:02.965][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 22:00:02.965][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 22:00:02.965][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 22:00:02.966][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:02.967][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:02.968][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:02.969][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:02.970][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:02.971][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:02.973][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:02.974][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:02.976][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:02.978][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:02.979][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:02.981][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:02.983][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-12-28 22:00:02.986][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.988][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-12-28 22:00:02.989][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.991][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:02.993][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:02.994][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:02.996][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:02.998][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:02.999][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 22:00:03.001][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:03.003][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:03.004][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-12-28 22:00:03.006][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:03.008][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:03.009][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:03.011][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:03.013][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:03.014][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:03.016][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:03.018][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:03.019][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:03.021][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:03.023][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:03.024][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:03.026][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:03.028][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:03.029][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:03.031][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:03.033][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-12-28 22:00:03.035][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:03.037][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 22:00:03.039][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:03.041][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:03.042][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:03.044][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:03.046][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:03.047][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:03.049][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 22:00:03.051][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:03.052][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:03.054][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-12-28 22:00:03.056][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:03.057][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:03.059][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:03.061][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:03.062][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:03.064][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:03.065][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:03.067][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:03.069][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:03.070][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:03.072][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:03.073][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:03.075][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:03.076][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:03.078][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:03.080][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:03.085][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 22:00:03.087][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.090][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.189][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-12-28 22:00:03.193][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-12-28 22:00:03.194][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-12-28 22:00:03.196][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-12-28 22:00:03.197][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 22:00:03.199][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 22:00:03.200][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-12-28 22:00:03.201][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-12-28 22:00:03.203][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-12-28 22:00:03.204][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 22:00:03.205][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 22:00:03.207][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-12-28 22:00:03.208][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-12-28 22:00:03.210][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-12-28 22:00:03.211][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-12-28 22:00:03.212][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 22:00:03.214][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-12-28 22:00:03.215][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-12-28 22:00:03.216][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 22:00:03.218][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-12-28 22:00:03.219][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-12-28 22:00:03.220][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-12-28 22:00:03.222][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-12-28 22:00:03.223][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-12-28 22:00:03.225][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-12-28 22:00:03.226][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-12-28 22:00:03.227][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-12-28 22:00:03.229][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-12-28 22:00:03.230][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-12-28 22:00:03.231][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-12-28 22:00:03.233][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-12-28 22:00:03.234][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-12-28 22:00:03.236][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-12-28 22:00:03.237][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-12-28 22:00:03.238][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-12-28 22:00:03.240][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-12-28 22:00:03.241][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-12-28 22:00:03.242][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-12-28 22:00:03.244][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-12-28 22:00:03.245][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-12-28 22:00:03.247][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-12-28 22:00:03.248][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-12-28 22:00:03.249][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-12-28 22:00:03.251][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-12-28 22:00:03.252][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-12-28 22:00:03.253][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-12-28 22:00:03.255][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-12-28 22:00:03.256][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-12-28 22:00:03.258][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-12-28 22:00:03.259][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-12-28 22:00:03.260][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-12-28 22:00:03.262][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-12-28 22:00:03.263][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-12-28 22:00:03.264][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-12-28 22:00:03.266][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-12-28 22:00:03.267][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-12-28 22:00:03.268][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-12-28 22:00:03.270][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-12-28 22:00:03.271][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-12-28 22:00:03.272][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-12-28 22:00:03.274][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-12-28 22:00:03.275][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-12-28 22:00:03.277][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-12-28 22:00:03.278][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-12-28 22:00:03.279][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-12-28 22:00:03.281][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-12-28 22:00:03.282][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 22:00:03.283][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 22:00:03.285][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-12-28 22:00:03.286][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-12-28 22:00:03.287][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-12-28 22:00:03.289][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-12-28 22:00:03.290][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-12-28 22:00:03.292][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-12-28 22:00:03.293][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-12-28 22:00:03.294][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-12-28 22:00:03.296][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-12-28 22:00:03.297][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-12-28 22:00:03.298][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-12-28 22:00:03.300][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-12-28 22:00:03.301][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-12-28 22:00:03.302][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-12-28 22:00:03.304][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-12-28 22:00:03.358][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-12-28 22:00:03.360][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2022-12-28 22:00:03.363][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 22:00:03.364][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.366][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:03.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:03.484][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2022-12-28 22:00:03.491][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:03.493][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:03.494][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-12-28 22:00:03.495][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:03.497][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:03.498][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:03.499][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2022-12-28 22:00:03.500][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:03.501][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:03.502][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-12-28 22:00:03.503][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:03.504][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:03.509][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2022-12-28 22:00:03.510][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2022-12-28 22:00:03.511][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2022-12-28 22:00:03.512][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:03.513][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 22:00:03.513][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2022-12-28 22:00:03.514][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-12-28 22:00:03.515][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:03.516][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:03.517][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:03.518][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:03.519][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:03.520][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:03.521][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-12-28 22:00:03.521][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2022-12-28 22:00:03.522][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:03.523][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:03.524][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:03.525][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:03.530][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 22:00:03.532][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 22:00:03.533][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 22:00:03.535][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 22:00:03.555][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:03.556][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2022-12-28 22:00:03.560][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:03.564][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-12-28 22:00:03.567][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:03.568][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:03.570][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2022-12-28 22:00:03.571][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2022-12-28 22:00:03.572][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-12-28 22:00:03.572][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2022-12-28 22:00:03.573][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:03.574][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:03.575][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2022-12-28 22:00:03.576][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2022-12-28 22:00:03.577][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:03.590][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-12-28 22:00:03.592][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:03.593][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:03.595][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2022-12-28 22:00:03.596][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:03.597][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2022-12-28 22:00:03.613][biodb::testThat]
biodb.INFO [2022-12-28 22:00:03.614][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-12-28 22:00:03.615][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:03.616][biodb::testThat]
biodb.TRACE[2022-12-28 22:00:03.622][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2022-12-28 22:00:03.627][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-12-28 22:00:03.630][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-12-28 22:00:03.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:03.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:03.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:03.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:03.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:03.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:03.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 22:00:03.658][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:03.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:03.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.661][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:03.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:03.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.687][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.688][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.690][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.710][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.717][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.719][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.720][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.721][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.723][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.732][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.734][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.743][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.744][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.745][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.746][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.755][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:03.756][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:03.757][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.758][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.759][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:03.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:03.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.767][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:03.768][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:03.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.771][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:03.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.781][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:03.782][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:03.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.784][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:03.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:03.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.793][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:03.794][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:03.799][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.800][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:03.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.809][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:03.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:03.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.812][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:03.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:03.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.824][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:03.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.834][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:03.835][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:03.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.837][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:03.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:03.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.846][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:03.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:03.848][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.849][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:03.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:03.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.858][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:03.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:03.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.862][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:03.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:03.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.870][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:03.871][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:03.873][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.873][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.875][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:03.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:03.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.882][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:03.883][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:03.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.885][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:03.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:03.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.894][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:03.895][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:03.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.897][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:03.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:03.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:03.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:03.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.945][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.950][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.954][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:03.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.958][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.963][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:03.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:03.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:03.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:03.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:03.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:03.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:04.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:04.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:04.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:04.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.044][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.052][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:04.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:04.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:04.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:04.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:04.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:04.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:04.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:04.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:04.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:04.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.094][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.115][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:04.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:04.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:04.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:04.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:04.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.152][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:04.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.169][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.205][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.217][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.229][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:04.262][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2022-12-28 22:00:04.267][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 22:00:04.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 22:00:04.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.272][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 22:00:04.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 22:00:04.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-12-28 22:00:04.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-12-28 22:00:04.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.280][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-12-28 22:00:04.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-12-28 22:00:04.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.316][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.352][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.356][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.361][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.385][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.388][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.413][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.414][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.415][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.416][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.447][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.448][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:04.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.476][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.488][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.492][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.497][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.501][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.502][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.504][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.505][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.529][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.531][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.532][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:04.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:04.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.544][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:04.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:04.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.549][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:04.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:04.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:04.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:04.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.557][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:04.558][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:04.559][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.560][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.561][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:04.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:04.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:04.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:04.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:04.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:04.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.589][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:04.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:04.591][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.592][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:04.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:04.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.606][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.610][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.614][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.618][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.620][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.621][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.622][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.623][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.650][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.675][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.676][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.678][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.706][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.707][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.709][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.735][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.736][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.738][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:04.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:04.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:04.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:04.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:04.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.763][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:04.764][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:04.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.766][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:04.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:04.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:04.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:04.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:04.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:04.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:04.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:04.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.798][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:04.800][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:04.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.803][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:04.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:04.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.820][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.834][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.835][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.847][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.852][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.856][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.860][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.861][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.863][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.864][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.876][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:04.877][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:04.878][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.879][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.884][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.886][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:04.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.888][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.893][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.895][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:04.896][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.897][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:04.905][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.906][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.912][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.913][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:04.914][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.915][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.921][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.922][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:04.923][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.924][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.930][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.931][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:04.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.933][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.939][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.940][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:04.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.942][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.948][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:04.949][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:04.950][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.951][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.957][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:04.958][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:04.959][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.960][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:04.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:04.972][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.973][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:04.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.982][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.989][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:04.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:04.991][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:04.997][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:04.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.001][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.006][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.008][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.009][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.010][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.019][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.025][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:05.026][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:05.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.028][ef$get] fields variable is a list.
biodb.INFO [2022-12-28 22:00:05.035][biodb::testThat]
biodb.INFO [2022-12-28 22:00:05.036][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-12-28 22:00:05.037][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:05.038][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:05.050][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2022-12-28 22:00:05.056][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-12-28 22:00:05.062][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:05.064][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-12-28 22:00:05.068][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2022-12-28 22:00:05.070][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 22:00:05.080][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2022-12-28 22:00:05.082][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 22:00:05.122][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-12-28 22:00:05.123][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-12-28 22:00:05.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:05.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:05.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:05.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:05.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:05.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:05.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 22:00:05.140][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.143][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.152][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.153][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.154][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.155][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.157][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.164][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.165][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.166][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.167][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.169][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.178][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.180][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.189][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.190][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.191][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.192][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.201][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.203][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.204][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.205][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.206][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.213][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.214][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.217][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.230][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.231][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.233][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.242][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.243][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.245][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.254][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:05.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:05.256][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.257][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.259][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:05.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:05.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.266][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:05.267][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:05.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.269][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:05.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:05.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.278][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.279][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.281][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.283][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.291][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.292][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.294][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.303][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.304][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.306][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.315][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.316][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.318][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.326][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:05.327][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:05.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.330][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.331][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:05.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:05.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.338][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:05.339][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:05.341][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.342][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.369][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.373][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.378][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.383][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.387][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:05.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:05.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:05.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:05.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:05.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:05.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:05.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:05.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:05.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:05.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.464][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.469][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.473][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:05.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:05.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:05.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:05.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:05.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:05.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:05.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:05.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:05.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:05.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:05.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:05.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.506][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.519][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.523][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:05.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:05.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:05.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:05.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:05.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:05.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:05.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.598][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:05.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:05.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.634][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:05.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:05.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.647][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:05.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:05.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:05.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:05.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:05.679][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2022-12-28 22:00:05.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-12-28 22:00:05.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-12-28 22:00:05.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-12-28 22:00:05.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-12-28 22:00:05.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-12-28 22:00:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-12-28 22:00:05.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-12-28 22:00:05.699][biodb::testThat]
biodb.INFO [2022-12-28 22:00:05.700][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-12-28 22:00:05.701][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:05.702][biodb::testThat]
biodb.TRACE[2022-12-28 22:00:05.705][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.706][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.707][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.708][ef$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:05.710][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2022-12-28 22:00:05.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:05.754][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2022-12-28 22:00:05.764][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2022-12-28 22:00:05.766][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-12-28 22:00:05.767][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-12-28 22:00:05.769][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:05.771][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:05.774][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-12-28 22:00:05.777][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:05.778][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-12-28 22:00:05.785][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-12-28 22:00:05.787][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-12-28 22:00:05.789][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-12-28 22:00:05.791][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-12-28 22:00:05.792][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-12-28 22:00:05.793][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-12-28 22:00:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:05.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:05.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:05.812][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-12-28 22:00:05.813][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-12-28 22:00:05.814][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2022-12-28 22:00:05.829][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.830][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.832][ef$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:05.834][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2022-12-28 22:00:05.848][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.861][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:05.866][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2022-12-28 22:00:05.914][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-12-28 22:00:05.915][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2022-12-28 22:00:05.916][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2022-12-28 22:00:05.927][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:05.929][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:05.931][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-12-28 22:00:05.932][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:05.933][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-12-28 22:00:05.952][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-12-28 22:00:05.953][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-12-28 22:00:05.954][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-12-28 22:00:05.956][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-12-28 22:00:05.957][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-12-28 22:00:05.958][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-12-28 22:00:05.960][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.964][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:05.972][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:05.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:05.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:05.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:05.977][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-12-28 22:00:05.978][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-12-28 22:00:05.979][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2022-12-28 22:00:05.994][biodb::testThat]
biodb.INFO [2022-12-28 22:00:05.996][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-12-28 22:00:05.997][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:05.998][biodb::testThat]
biodb.TRACE[2022-12-28 22:00:06.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:06.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:06.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:06.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:06.047][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2022-12-28 22:00:06.048][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-12-28 22:00:06.049][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2022-12-28 22:00:06.051][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:06.053][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:06.054][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-12-28 22:00:06.071][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:06.072][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-12-28 22:00:06.077][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-12-28 22:00:06.078][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-12-28 22:00:06.079][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-12-28 22:00:06.080][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-12-28 22:00:06.082][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-12-28 22:00:06.083][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-12-28 22:00:06.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:06.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:06.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:06.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:06.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:06.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:06.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:06.102][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-12-28 22:00:06.103][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2022-12-28 22:00:06.119][biodb::testThat]
biodb.INFO [2022-12-28 22:00:06.120][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-12-28 22:00:06.121][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:06.122][biodb::testThat]
biodb.TRACE[2022-12-28 22:00:06.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 22:00:06.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 22:00:06.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 22:00:06.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 22:00:06.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-12-28 22:00:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-12-28 22:00:06.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.161][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-12-28 22:00:06.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-12-28 22:00:06.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.203][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 22:00:06.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 22:00:06.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.207][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-12-28 22:00:06.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-12-28 22:00:06.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.211][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-12-28 22:00:06.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-12-28 22:00:06.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:06.215][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-12-28 22:00:06.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-12-28 22:00:06.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:06.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-12-28 22:00:06.223][biodb::testThat]
biodb.INFO [2022-12-28 22:00:06.224][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-12-28 22:00:06.225][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:06.226][biodb::testThat]
biodb.INFO [2022-12-28 22:00:06.231][biodb::testThat]
biodb.INFO [2022-12-28 22:00:06.232][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-12-28 22:00:06.233][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:06.234][biodb::testThat]
biodb.INFO [2022-12-28 22:00:06.240][biodb::testThat]
biodb.INFO [2022-12-28 22:00:06.241][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-12-28 22:00:06.242][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:06.243][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:06.246][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2022-12-28 22:00:06.800][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2022-12-28 22:00:11.857][biodb::testThat]
biodb.INFO [2022-12-28 22:00:11.859][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-12-28 22:00:11.861][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:11.863][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:12.460][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2022-12-28 22:00:13.291][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:13.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:13.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.294][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.295][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:13.296][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:13.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.298][ef$get] fields variable is a list.
biodb.INFO [2022-12-28 22:00:13.300][biodb::testThat]
biodb.INFO [2022-12-28 22:00:13.301][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2022-12-28 22:00:13.302][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:13.303][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:13.306][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2022-12-28 22:00:13.349][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-12-28 22:00:13.352][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.353][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-12-28 22:00:13.371][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2022-12-28 22:00:13.373][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-12-28 22:00:13.374][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-12-28 22:00:13.375][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 22:00:13.377][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.396][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-12-28 22:00:13.397][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-12-28 22:00:13.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:13.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:13.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:13.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:13.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:13.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 22:00:13.412][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:13.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:13.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:13.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:13.450][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2022-12-28 22:00:13.451][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2022-12-28 22:00:13.469][biodb::testThat]
biodb.INFO [2022-12-28 22:00:13.470][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2022-12-28 22:00:13.471][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:13.472][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:13.479][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2022-12-28 22:00:13.481][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2022-12-28 22:00:13.482][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-12-28 22:00:13.484][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.485][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-12-28 22:00:13.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2022-12-28 22:00:13.489][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-12-28 22:00:13.490][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-12-28 22:00:13.491][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 22:00:13.493][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.507][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-12-28 22:00:13.508][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-12-28 22:00:13.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:13.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:13.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:13.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:13.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:13.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 22:00:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:13.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:13.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.528][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:13.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:13.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:13.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:13.564][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2022-12-28 22:00:13.565][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2022-12-28 22:00:13.566][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2022-12-28 22:00:13.579][biodb::testThat]
biodb.INFO [2022-12-28 22:00:13.580][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2022-12-28 22:00:13.581][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:13.582][biodb::testThat]
biodb.INFO [2022-12-28 22:00:13.601][biodb::testThat]
biodb.INFO [2022-12-28 22:00:13.603][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2022-12-28 22:00:13.604][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:13.605][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:13.608][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.609][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.611][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-12-28 22:00:13.612][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.613][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-12-28 22:00:13.618][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-12-28 22:00:13.619][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-12-28 22:00:13.620][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-12-28 22:00:13.621][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2022-12-28 22:00:13.629][biodb::testThat]
biodb.INFO [2022-12-28 22:00:13.630][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2022-12-28 22:00:13.631][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:13.632][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:13.634][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.636][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.638][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-12-28 22:00:13.639][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:13.640][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-12-28 22:00:13.649][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-12-28 22:00:13.650][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-12-28 22:00:13.651][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-12-28 22:00:13.653][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2022-12-28 22:00:13.666][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:13.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:13.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.669][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:13.670][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:13.671][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:13.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:13.673][ef$get] fields variable is a list.
biodb.INFO [2022-12-28 22:00:13.674][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-12-28 22:00:13.675][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2022-12-28 22:00:13.682][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2022-12-28 22:00:13.683][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-12-28 22:00:13.684][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:13.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:13.686][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:13.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:13.688][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-12-28 22:00:13.693][biodb::testContext]
biodb.INFO [2022-12-28 22:00:13.694][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 22:00:13.695][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2022-12-28 22:00:13.697][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 22:00:13.698][biodb::testContext]
biodb.INFO [2022-12-28 22:00:13.705][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2022-12-28 22:00:13.707][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-12-28 22:00:13.712][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 22:00:13.714][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-12-28 22:00:13.715][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-12-28 22:00:13.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.720][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-12-28 22:00:13.721][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-12-28 22:00:13.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.725][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-12-28 22:00:13.726][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-12-28 22:00:13.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.730][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-12-28 22:00:13.731][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-12-28 22:00:13.732][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-12-28 22:00:13.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.736][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-12-28 22:00:13.737][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-12-28 22:00:13.738][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-12-28 22:00:13.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.742][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-12-28 22:00:13.743][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-12-28 22:00:13.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.751][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-12-28 22:00:13.752][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-12-28 22:00:13.753][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-12-28 22:00:13.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.757][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-12-28 22:00:13.758][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-12-28 22:00:13.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.762][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-12-28 22:00:13.763][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-12-28 22:00:13.764][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-12-28 22:00:13.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.768][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-12-28 22:00:13.770][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-12-28 22:00:13.771][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-12-28 22:00:13.772][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-12-28 22:00:13.774][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-12-28 22:00:13.775][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-12-28 22:00:13.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.780][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-12-28 22:00:13.781][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-12-28 22:00:13.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.785][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-12-28 22:00:13.786][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-12-28 22:00:13.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.790][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-12-28 22:00:13.791][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-12-28 22:00:13.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.794][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-12-28 22:00:13.796][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-12-28 22:00:13.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.799][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-12-28 22:00:13.800][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-12-28 22:00:13.801][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.804][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-12-28 22:00:13.805][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-12-28 22:00:13.808][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-12-28 22:00:13.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.812][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-12-28 22:00:13.814][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-12-28 22:00:13.815][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-12-28 22:00:13.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.819][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-12-28 22:00:13.845][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.847][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-12-28 22:00:13.848][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.849][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:13.850][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.852][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.853][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.854][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.855][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 22:00:13.856][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:13.857][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.858][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-12-28 22:00:13.860][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:13.861][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.862][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.863][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 22:00:13.863][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 22:00:13.863][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 22:00:13.863][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 22:00:13.863][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 22:00:13.864][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:13.865][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:13.866][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:13.867][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:13.868][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:13.869][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:13.870][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.872][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.873][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:13.874][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:13.875][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.876][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.877][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-12-28 22:00:13.879][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.880][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 22:00:13.881][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.882][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:13.883][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.884][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.885][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.886][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.887][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 22:00:13.888][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:13.890][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.891][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-12-28 22:00:13.892][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:13.893][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.894][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.895][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 22:00:13.895][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 22:00:13.895][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 22:00:13.895][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 22:00:13.895][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 22:00:13.896][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:13.897][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:13.898][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:13.899][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:13.900][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:13.901][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:13.902][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.903][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.904][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:13.905][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:13.906][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.907][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.908][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-12-28 22:00:13.910][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.911][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-12-28 22:00:13.913][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.914][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:13.915][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.916][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.917][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.918][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.919][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 22:00:13.920][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:13.922][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.923][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-12-28 22:00:13.927][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:13.928][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.930][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.931][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.932][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:13.933][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:13.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:13.935][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:13.936][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:13.937][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:13.938][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.939][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.940][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:13.941][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:13.942][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.944][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.945][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-12-28 22:00:13.947][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.948][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 22:00:13.949][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.950][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:13.951][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.952][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.953][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.954][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.955][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 22:00:13.956][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:13.958][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.959][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-12-28 22:00:13.960][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:13.961][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.962][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:13.963][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.964][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:13.965][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:13.966][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:13.967][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:13.968][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:13.969][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:13.970][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:13.971][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.973][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:13.973][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:13.974][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:13.976][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:13.977][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 22:00:13.978][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:13.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:13.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:13.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:13.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:13.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:13.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:13.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:13.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:13.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.009][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.073][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.105][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-12-28 22:00:14.106][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-12-28 22:00:14.108][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-12-28 22:00:14.110][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-12-28 22:00:14.112][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 22:00:14.113][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 22:00:14.115][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-12-28 22:00:14.118][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-12-28 22:00:14.119][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-12-28 22:00:14.121][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 22:00:14.122][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 22:00:14.124][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-12-28 22:00:14.125][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-12-28 22:00:14.126][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-12-28 22:00:14.128][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-12-28 22:00:14.130][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 22:00:14.132][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-12-28 22:00:14.134][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-12-28 22:00:14.137][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 22:00:14.139][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-12-28 22:00:14.141][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-12-28 22:00:14.143][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-12-28 22:00:14.146][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-12-28 22:00:14.148][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-12-28 22:00:14.150][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-12-28 22:00:14.152][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-12-28 22:00:14.155][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-12-28 22:00:14.157][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-12-28 22:00:14.159][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-12-28 22:00:14.167][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-12-28 22:00:14.170][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-12-28 22:00:14.172][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-12-28 22:00:14.174][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-12-28 22:00:14.177][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-12-28 22:00:14.179][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-12-28 22:00:14.181][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-12-28 22:00:14.183][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-12-28 22:00:14.186][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-12-28 22:00:14.188][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-12-28 22:00:14.190][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-12-28 22:00:14.192][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-12-28 22:00:14.194][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-12-28 22:00:14.197][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-12-28 22:00:14.199][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-12-28 22:00:14.201][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-12-28 22:00:14.203][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-12-28 22:00:14.206][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-12-28 22:00:14.208][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-12-28 22:00:14.210][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-12-28 22:00:14.212][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-12-28 22:00:14.214][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-12-28 22:00:14.216][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-12-28 22:00:14.219][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-12-28 22:00:14.221][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-12-28 22:00:14.223][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-12-28 22:00:14.225][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-12-28 22:00:14.227][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-12-28 22:00:14.230][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-12-28 22:00:14.232][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-12-28 22:00:14.234][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-12-28 22:00:14.236][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-12-28 22:00:14.239][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-12-28 22:00:14.241][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-12-28 22:00:14.242][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-12-28 22:00:14.244][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-12-28 22:00:14.246][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-12-28 22:00:14.248][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 22:00:14.249][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 22:00:14.250][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-12-28 22:00:14.252][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-12-28 22:00:14.253][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-12-28 22:00:14.255][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-12-28 22:00:14.256][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-12-28 22:00:14.258][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-12-28 22:00:14.259][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-12-28 22:00:14.261][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-12-28 22:00:14.262][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-12-28 22:00:14.263][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-12-28 22:00:14.265][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-12-28 22:00:14.267][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-12-28 22:00:14.269][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-12-28 22:00:14.272][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-12-28 22:00:14.273][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-12-28 22:00:14.276][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-12-28 22:00:14.279][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2022-12-28 22:00:14.280][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 22:00:14.282][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.288][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.299][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:14.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:14.465][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2022-12-28 22:00:14.467][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:14.470][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:14.472][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-12-28 22:00:14.473][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:14.475][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:14.477][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:14.478][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2022-12-28 22:00:14.480][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:14.481][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:14.483][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-12-28 22:00:14.485][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:14.486][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:14.488][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2022-12-28 22:00:14.490][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2022-12-28 22:00:14.491][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2022-12-28 22:00:14.493][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:14.495][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 22:00:14.495][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2022-12-28 22:00:14.497][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-12-28 22:00:14.498][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:14.500][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:14.501][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:14.503][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:14.504][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:14.506][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:14.508][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-12-28 22:00:14.508][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2022-12-28 22:00:14.509][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:14.511][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:14.512][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:14.514][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:14.516][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 22:00:14.519][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 22:00:14.521][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 22:00:14.524][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 22:00:14.528][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:14.530][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2022-12-28 22:00:14.532][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:14.534][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-12-28 22:00:14.536][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:14.538][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:14.540][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2022-12-28 22:00:14.542][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2022-12-28 22:00:14.543][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-12-28 22:00:14.543][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2022-12-28 22:00:14.545][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:14.547][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:14.548][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2022-12-28 22:00:14.549][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2022-12-28 22:00:14.551][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:14.554][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-12-28 22:00:14.561][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:14.563][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:14.566][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2022-12-28 22:00:14.568][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:14.570][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2022-12-28 22:00:14.572][biodb::testThat]
biodb.INFO [2022-12-28 22:00:14.574][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2022-12-28 22:00:14.576][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:14.577][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:14.584][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:14.587][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:14.589][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-12-28 22:00:14.592][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:14.593][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-12-28 22:00:14.600][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-12-28 22:00:14.602][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-12-28 22:00:14.603][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-12-28 22:00:14.605][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-12-28 22:00:14.609][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2022-12-28 22:00:14.613][biodb::testThat]
biodb.INFO [2022-12-28 22:00:14.615][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2022-12-28 22:00:14.616][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:14.618][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:14.621][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2022-12-28 22:00:14.623][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-12-28 22:00:14.626][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:14.628][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-12-28 22:00:14.631][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2022-12-28 22:00:14.633][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 22:00:14.642][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2022-12-28 22:00:14.643][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 22:00:14.656][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-12-28 22:00:14.657][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-12-28 22:00:14.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:14.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:14.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:14.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:14.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:14.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:14.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 22:00:14.673][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:14.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:14.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.676][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:14.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.685][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.686][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.692][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.694][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.702][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.703][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.704][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.705][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.706][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:14.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:14.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.718][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:14.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:14.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.727][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:14.729][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:14.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.731][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:14.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:14.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:14.741][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:14.742][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.743][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.744][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:14.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:14.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:14.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.756][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:14.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:14.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.765][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:14.767][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:14.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.770][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:14.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.781][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:14.782][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:14.783][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.784][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:14.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:14.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.794][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:14.796][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:14.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.802][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:14.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:14.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:14.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:14.813][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.814][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:14.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:14.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:14.827][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:14.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.830][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:14.845][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:14.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.847][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:14.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:14.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.856][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:14.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:14.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.859][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.871][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:14.873][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:14.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.876][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.878][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:14.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:14.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.888][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:14.889][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:14.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.891][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:14.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:14.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.904][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:14.906][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:14.908][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.909][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.911][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:14.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:14.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:14.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:14.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:14.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:14.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.948][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.955][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.961][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.968][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.974][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.981][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:14.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:14.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:14.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:14.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:14.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:14.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:14.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:15.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:15.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:15.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:15.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:15.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:15.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:15.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:15.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:15.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:15.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:15.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:15.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:15.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:15.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:15.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:15.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:15.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:15.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:15.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:15.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:15.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.197][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:15.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:15.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.202][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:15.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:15.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.206][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:15.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:15.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:15.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:15.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:15.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:15.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:15.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:15.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:15.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:15.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:15.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:15.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:15.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:15.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.247][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:15.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:15.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.251][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:15.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:15.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.255][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:15.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:15.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:15.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:15.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:15.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:15.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:15.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:15.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:15.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:15.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.276][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:15.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:15.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:15.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:15.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:15.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:15.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:15.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:15.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:15.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:15.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:15.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:15.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:15.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:15.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:15.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:15.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.347][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:15.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:15.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:15.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:15.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:15.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:15.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:15.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:15.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:15.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.386][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:15.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.392][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:15.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:15.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.404][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:15.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:15.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:15.443][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2022-12-28 22:00:15.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:15.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:15.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:15.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:15.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-12-28 22:00:15.463][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-12-28 22:00:15.465][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2022-12-28 22:00:15.466][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2022-12-28 22:00:15.467][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-12-28 22:00:15.468][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:15.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:15.471][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.473][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-12-28 22:00:15.479][biodb::testContext]
biodb.INFO [2022-12-28 22:00:15.481][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 22:00:15.482][biodb::testContext] Test context - Test search of entries
biodb.INFO [2022-12-28 22:00:15.483][biodb::testContext] ********************************************************************************
biodb.INFO [2022-12-28 22:00:15.484][biodb::testContext]
biodb.INFO [2022-12-28 22:00:15.493][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2022-12-28 22:00:15.495][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-12-28 22:00:15.500][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 22:00:15.501][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-12-28 22:00:15.503][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-12-28 22:00:15.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.507][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-12-28 22:00:15.509][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-12-28 22:00:15.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.514][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-12-28 22:00:15.515][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-12-28 22:00:15.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.520][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-12-28 22:00:15.521][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-12-28 22:00:15.522][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-12-28 22:00:15.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.527][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-12-28 22:00:15.528][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-12-28 22:00:15.530][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-12-28 22:00:15.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.534][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-12-28 22:00:15.535][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-12-28 22:00:15.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.540][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-12-28 22:00:15.541][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-12-28 22:00:15.543][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-12-28 22:00:15.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.547][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-12-28 22:00:15.548][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-12-28 22:00:15.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.553][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-12-28 22:00:15.554][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-12-28 22:00:15.556][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-12-28 22:00:15.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.560][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-12-28 22:00:15.561][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-12-28 22:00:15.563][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-12-28 22:00:15.564][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-12-28 22:00:15.565][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-12-28 22:00:15.566][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-12-28 22:00:15.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.571][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-12-28 22:00:15.572][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-12-28 22:00:15.573][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.577][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-12-28 22:00:15.578][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-12-28 22:00:15.579][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.583][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-12-28 22:00:15.584][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-12-28 22:00:15.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.589][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-12-28 22:00:15.590][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-12-28 22:00:15.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.595][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-12-28 22:00:15.596][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-12-28 22:00:15.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.601][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-12-28 22:00:15.606][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-12-28 22:00:15.609][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-12-28 22:00:15.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.614][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-12-28 22:00:15.615][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-12-28 22:00:15.616][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-12-28 22:00:15.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.621][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-12-28 22:00:15.623][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.624][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-12-28 22:00:15.625][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.626][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:15.627][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.628][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.629][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.631][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.632][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 22:00:15.633][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:15.634][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.635][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-12-28 22:00:15.636][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:15.637][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.638][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.639][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 22:00:15.639][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 22:00:15.639][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 22:00:15.639][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 22:00:15.639][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 22:00:15.640][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:15.641][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:15.642][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:15.643][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:15.644][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:15.645][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:15.646][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.647][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.648][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:15.649][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:15.650][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.651][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.653][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-12-28 22:00:15.654][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.656][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 22:00:15.657][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.658][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:15.659][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.660][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.661][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.662][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.663][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 22:00:15.664][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:15.665][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.666][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-12-28 22:00:15.667][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:15.668][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.669][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.670][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 22:00:15.670][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-12-28 22:00:15.670][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-12-28 22:00:15.670][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-12-28 22:00:15.670][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-12-28 22:00:15.671][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:15.672][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:15.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:15.674][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:15.675][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:15.676][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:15.677][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.678][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.679][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:15.680][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:15.681][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.682][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.684][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-12-28 22:00:15.685][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.686][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-12-28 22:00:15.687][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.689][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:15.690][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.691][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.692][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.693][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.694][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-12-28 22:00:15.695][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:15.696][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.697][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-12-28 22:00:15.698][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:15.699][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.700][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.701][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.702][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:15.703][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:15.704][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:15.705][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:15.706][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:15.707][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:15.708][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.709][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.710][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:15.711][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:15.712][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.713][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.714][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-12-28 22:00:15.716][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.717][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-12-28 22:00:15.718][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.719][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:15.720][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.721][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.723][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.724][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.725][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-12-28 22:00:15.726][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:15.727][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.728][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-12-28 22:00:15.729][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:15.730][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.731][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:15.732][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.733][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-12-28 22:00:15.734][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:15.735][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:15.736][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:15.737][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:15.738][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:15.739][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:15.740][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.741][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:15.742][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:15.743][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:15.744][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:15.745][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 22:00:15.746][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.802][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.816][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:15.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:15.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:15.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:15.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:15.848][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-12-28 22:00:15.851][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-12-28 22:00:15.854][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-12-28 22:00:15.856][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-12-28 22:00:15.859][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-12-28 22:00:15.861][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 22:00:15.863][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-12-28 22:00:15.866][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-12-28 22:00:15.868][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-12-28 22:00:15.870][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 22:00:15.872][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 22:00:15.874][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-12-28 22:00:15.876][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-12-28 22:00:15.879][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-12-28 22:00:15.881][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-12-28 22:00:15.883][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 22:00:15.886][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-12-28 22:00:15.888][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-12-28 22:00:15.890][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-12-28 22:00:15.892][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-12-28 22:00:15.895][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-12-28 22:00:15.897][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-12-28 22:00:15.899][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-12-28 22:00:15.902][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-12-28 22:00:15.904][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-12-28 22:00:15.906][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-12-28 22:00:15.908][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-12-28 22:00:15.911][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-12-28 22:00:15.913][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-12-28 22:00:15.915][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-12-28 22:00:15.917][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-12-28 22:00:15.919][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-12-28 22:00:15.922][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-12-28 22:00:15.924][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-12-28 22:00:15.926][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-12-28 22:00:15.928][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-12-28 22:00:15.930][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-12-28 22:00:15.932][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-12-28 22:00:15.935][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-12-28 22:00:15.937][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-12-28 22:00:15.939][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-12-28 22:00:15.941][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-12-28 22:00:15.944][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-12-28 22:00:15.946][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-12-28 22:00:15.948][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-12-28 22:00:15.950][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-12-28 22:00:15.953][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-12-28 22:00:15.955][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-12-28 22:00:15.957][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-12-28 22:00:15.959][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-12-28 22:00:15.962][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-12-28 22:00:15.964][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-12-28 22:00:15.966][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-12-28 22:00:15.968][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-12-28 22:00:15.971][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-12-28 22:00:15.973][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-12-28 22:00:15.975][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-12-28 22:00:15.977][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-12-28 22:00:15.979][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-12-28 22:00:15.982][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-12-28 22:00:15.984][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-12-28 22:00:15.986][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-12-28 22:00:15.988][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-12-28 22:00:15.991][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-12-28 22:00:15.993][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-12-28 22:00:15.995][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-12-28 22:00:15.997][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-12-28 22:00:16.000][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-12-28 22:00:16.002][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-12-28 22:00:16.004][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-12-28 22:00:16.006][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-12-28 22:00:16.009][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-12-28 22:00:16.011][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-12-28 22:00:16.013][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-12-28 22:00:16.015][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-12-28 22:00:16.018][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-12-28 22:00:16.020][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-12-28 22:00:16.022][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-12-28 22:00:16.024][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-12-28 22:00:16.032][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-12-28 22:00:16.035][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-12-28 22:00:16.037][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-12-28 22:00:16.039][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-12-28 22:00:16.041][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-12-28 22:00:16.044][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2022-12-28 22:00:16.046][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-12-28 22:00:16.047][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.050][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.054][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.173][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.179][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-12-28 22:00:16.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.233][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2022-12-28 22:00:16.236][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:16.239][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:16.240][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-12-28 22:00:16.242][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:16.243][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-12-28 22:00:16.244][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:16.245][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2022-12-28 22:00:16.246][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:16.247][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-12-28 22:00:16.248][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2022-12-28 22:00:16.249][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-12-28 22:00:16.250][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:16.251][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2022-12-28 22:00:16.252][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2022-12-28 22:00:16.253][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2022-12-28 22:00:16.255][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-12-28 22:00:16.256][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-12-28 22:00:16.256][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2022-12-28 22:00:16.257][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2022-12-28 22:00:16.258][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:16.259][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:16.260][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-12-28 22:00:16.261][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-12-28 22:00:16.261][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-12-28 22:00:16.262][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-12-28 22:00:16.263][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-12-28 22:00:16.263][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2022-12-28 22:00:16.264][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:16.265][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:16.266][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-12-28 22:00:16.267][self$setPropertyValue]
biodb.DEBUG[2022-12-28 22:00:16.269][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-12-28 22:00:16.270][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-12-28 22:00:16.272][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-12-28 22:00:16.273][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-12-28 22:00:16.276][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:16.277][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2022-12-28 22:00:16.278][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:16.280][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-12-28 22:00:16.282][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:16.283][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:16.285][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2022-12-28 22:00:16.286][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2022-12-28 22:00:16.287][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2022-12-28 22:00:16.287][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2022-12-28 22:00:16.288][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-12-28 22:00:16.289][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-12-28 22:00:16.290][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2022-12-28 22:00:16.291][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2022-12-28 22:00:16.292][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2022-12-28 22:00:16.294][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2022-12-28 22:00:16.295][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:16.296][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:16.298][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.17-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2022-12-28 22:00:16.299][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2022-12-28 22:00:16.300][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2022-12-28 22:00:16.301][biodb::testThat]
biodb.INFO [2022-12-28 22:00:16.302][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2022-12-28 22:00:16.303][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-12-28 22:00:16.304][biodb::testThat]
biodb.DEBUG[2022-12-28 22:00:16.315][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-12-28 22:00:16.316][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2022-12-28 22:00:16.317][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2022-12-28 22:00:16.321][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:16.323][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:16.324][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-12-28 22:00:16.326][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:16.327][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-12-28 22:00:16.331][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-12-28 22:00:16.333][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-12-28 22:00:16.334][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-12-28 22:00:16.335][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-12-28 22:00:16.336][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-12-28 22:00:16.337][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2022-12-28 22:00:16.339][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2022-12-28 22:00:16.340][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-12-28 22:00:16.342][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:16.343][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-12-28 22:00:16.346][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2022-12-28 22:00:16.347][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 22:00:16.350][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2022-12-28 22:00:16.351][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 22:00:16.364][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-12-28 22:00:16.366][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-12-28 22:00:16.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:16.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 22:00:16.382][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.385][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.394][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.395][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.397][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.399][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.411][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.412][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.413][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.414][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.415][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.428][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.429][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.438][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.439][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.441][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.449][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.451][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.453][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.464][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.477][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.478][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.479][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.480][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.489][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.490][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.492][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.501][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:16.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:16.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.504][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.505][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:16.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.512][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:16.513][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:16.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.515][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:16.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:16.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.524][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.527][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.538][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.539][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.548][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.550][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.551][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.560][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:16.561][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:16.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.563][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.564][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:16.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:16.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:16.573][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:16.574][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.575][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:16.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:16.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.583][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:16.584][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:16.586][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.586][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:16.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.612][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.616][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:16.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.629][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:16.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:16.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:16.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:16.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:16.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:16.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:16.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:16.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.697][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:16.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:16.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.701][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:16.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:16.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:16.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:16.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:16.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:16.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:16.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:16.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:16.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:16.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:16.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:16.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:16.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:16.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.746][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.750][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.754][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:16.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:16.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:16.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:16.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:16.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:16.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:16.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.809][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.832][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:16.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:16.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:16.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:16.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.872][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:16.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:16.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.878][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:16.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:16.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.889][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:16.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:16.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:16.934][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2022-12-28 22:00:16.935][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:16.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:16.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.941][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:16.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:16.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.947][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:16.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:16.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:16.952][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:16.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:16.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:16.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:16.958][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-12-28 22:00:16.959][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-12-28 22:00:16.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:16.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:16.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:16.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:16.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:16.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:16.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:16.978][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2022-12-28 22:00:16.979][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2022-12-28 22:00:16.981][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:16.983][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2022-12-28 22:00:16.985][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2022-12-28 22:00:16.986][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-12-28 22:00:16.989][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2022-12-28 22:00:16.990][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2022-12-28 22:00:17.019][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2022-12-28 22:00:17.021][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2022-12-28 22:00:17.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:17.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:17.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:17.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:17.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:17.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:17.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 22:00:17.037][ef$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.040][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.049][ef$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.050][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.052][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.061][ef$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.062][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.064][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.065][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.075][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.076][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.084][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.085][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.087][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.096][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.099][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.108][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.109][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.111][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.120][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.121][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.122][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.123][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.133][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.134][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.135][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.136][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.145][ef$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:17.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:17.147][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.148][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:17.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:17.160][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.161][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:17.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:17.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.173][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.174][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.182][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.184][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.185][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.186][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.194][ef$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.195][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.196][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.197][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.206][ef$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.207][ef$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.212][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.213][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.214][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.221][ef$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:17.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:17.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.224][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:17.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:17.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.233][ef$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:17.234][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:17.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.236][ef$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.237][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2022-12-28 22:00:17.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:17.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.262][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.267][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-12-28 22:00:17.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.271][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.275][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.280][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2022-12-28 22:00:17.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-12-28 22:00:17.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2022-12-28 22:00:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-12-28 22:00:17.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2022-12-28 22:00:17.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:17.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:17.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:17.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2022-12-28 22:00:17.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.349][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.357][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:17.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:17.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.366][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:17.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:17.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-12-28 22:00:17.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-12-28 22:00:17.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:17.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:17.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:17.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:17.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2022-12-28 22:00:17.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2022-12-28 22:00:17.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.401][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.409][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-12-28 22:00:17.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.413][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.417][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-12-28 22:00:17.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-12-28 22:00:17.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:17.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:17.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:17.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:17.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2022-12-28 22:00:17.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2022-12-28 22:00:17.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.463][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:17.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.479][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2022-12-28 22:00:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2022-12-28 22:00:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-12-28 22:00:17.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-12-28 22:00:17.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.511][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:17.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-12-28 22:00:17.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-12-28 22:00:17.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-12-28 22:00:17.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:17.557][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2022-12-28 22:00:17.558][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:17.578][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-12-28 22:00:17.579][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2022-12-28 22:00:17.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:17.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:17.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:17.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:17.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:17.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:17.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:17.603][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-12-28 22:00:17.604][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2022-12-28 22:00:17.605][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2022-12-28 22:00:17.607][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:17.609][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:17.611][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-12-28 22:00:17.612][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:17.613][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-12-28 22:00:17.618][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-12-28 22:00:17.619][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-12-28 22:00:17.620][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-12-28 22:00:17.621][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-12-28 22:00:17.622][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-12-28 22:00:17.623][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-12-28 22:00:17.625][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.630][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.634][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.638][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.642][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.646][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:17.655][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-12-28 22:00:17.656][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-12-28 22:00:17.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:17.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:17.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:17.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:17.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:17.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:17.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 22:00:17.669][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.673][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.677][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.682][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.686][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.690][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.694][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:17.698][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2022-12-28 22:00:17.699][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-12-28 22:00:17.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:17.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:17.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:17.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:17.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:17.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:17.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-12-28 22:00:17.722][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2022-12-28 22:00:17.723][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2022-12-28 22:00:17.725][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2022-12-28 22:00:17.726][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:17.728][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:17.730][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2022-12-28 22:00:17.731][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2022-12-28 22:00:17.732][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2022-12-28 22:00:17.736][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2022-12-28 22:00:17.738][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2022-12-28 22:00:17.739][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2022-12-28 22:00:17.740][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2022-12-28 22:00:17.741][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2022-12-28 22:00:17.742][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2022-12-28 22:00:17.744][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.756][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.770][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:17.775][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2022-12-28 22:00:17.777][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2022-12-28 22:00:17.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:17.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:17.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:17.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:17.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:17.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:17.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-12-28 22:00:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.800][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.808][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.812][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-12-28 22:00:17.817][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2022-12-28 22:00:17.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2022-12-28 22:00:17.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-12-28 22:00:17.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-12-28 22:00:17.821][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2022-12-28 22:00:17.822][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2022-12-28 22:00:17.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-12-28 22:00:17.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:18.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:18.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:18.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:18.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:18.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2022-12-28 22:00:18.055][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-12-28 22:00:18.057][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2022-12-28 22:00:18.059][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2022-12-28 22:00:18.060][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-12-28 22:00:18.062][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-12-28 22:00:18.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-12-28 22:00:18.065][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-12-28 22:00:18.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-12-28 22:00:18.068][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-12-28 22:00:18.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 186 ]
> 
> proc.time()
   user  system elapsed 
   9.82    0.53   17.43

Example timings

biodbHmdb.Rcheck/biodbHmdb-Ex.timings

nameusersystemelapsed
HmdbMetabolitesConn1.971.173.14
HmdbMetabolitesEntry0.670.000.68