Back to Multiple platform build/check report for BioC 3.17
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2023-01-10 11:11:26 -0500 (Tue, 10 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2022-12-10 r83428) -- "Unsuffered Consequences" 4463
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-12-10 r83428 ucrt) -- "Unsuffered Consequences" 4244
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-12-10 r83428) -- "Unsuffered Consequences" 4255
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for tscR on merida1


To the developers/maintainers of the tscR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/tscR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2084/2160HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tscR 1.11.0  (landing page)
Fernando Pérez-Sanz
Snapshot Date: 2023-01-09 14:00:21 -0500 (Mon, 09 Jan 2023)
git_url: https://git.bioconductor.org/packages/tscR
git_branch: master
git_last_commit: 1fbe1eb
git_last_commit_date: 2022-11-01 11:21:27 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: tscR
Version: 1.11.0
Command: rm -rf tscR.buildbin-libdir && mkdir tscR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tscR_1.11.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R tscR.buildbin-libdir
StartedAt: 2023-01-10 10:50:04 -0500 (Tue, 10 Jan 2023)
EndedAt: 2023-01-10 10:51:33 -0500 (Tue, 10 Jan 2023)
EllapsedTime: 89.1 seconds
RetCode: 0
Status:   OK  
PackageFile: tscR_1.11.0.tgz
PackageFileSize: 1.763 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf tscR.buildbin-libdir && mkdir tscR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tscR_1.11.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R tscR.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=tscR.buildbin-libdir tscR_1.11.0.tar.gz'
>>>>>>> 

* installing *source* package ‘tscR’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include    -fPIC  -Wall -g -O2  -c tscR.c -o tscR.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include    -fPIC  -Wall -g -O2  -c tscR_init.c -o tscR_init.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o tscR.so tscR.o tscR_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.17-bioc/meat/tscR.buildbin-libdir/00LOCK-tscR/00new/tscR/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tscR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR tscR.buildbin-libdir/tscR/libs/tscR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgcc_s.1.dylib" "tscR.buildbin-libdir/tscR/libs/tscR.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgfortran.5.dylib" "tscR.buildbin-libdir/tscR/libs/tscR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libquadmath.0.dylib" "tscR.buildbin-libdir/tscR/libs/tscR.so"