Back to Build/check report for BioC 3.16 experimental data |
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This page was generated on 2023-04-11 14:50:26 -0400 (Tue, 11 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the curatedAdipoRNA package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 79/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
curatedAdipoRNA 1.14.0 (landing page) Mahmoud Ahmed
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ![]() | |||||||
Package: curatedAdipoRNA |
Version: 1.14.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:curatedAdipoRNA.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings curatedAdipoRNA_1.14.0.tar.gz |
StartedAt: 2023-04-11 11:36:47 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 11:39:00 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 132.9 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: curatedAdipoRNA.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:curatedAdipoRNA.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings curatedAdipoRNA_1.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/curatedAdipoRNA.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘curatedAdipoRNA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘curatedAdipoRNA’ version ‘1.14.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘curatedAdipoRNA’ can be installed ... OK * checking installed package size ... NOTE installed size is 7.8Mb sub-directories of 1Mb or more: data 7.6Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Package in Depends field not imported from: ‘SummarizedExperiment’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... NOTE Note: found 1 marked UTF-8 string * checking LazyData ... WARNING LazyData DB of 7.6 MB without LazyDataCompression set See §1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘curatedadiporna_vignette.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 3 NOTEs See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/curatedAdipoRNA.Rcheck/00check.log’ for details.
curatedAdipoRNA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL curatedAdipoRNA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘curatedAdipoRNA’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (curatedAdipoRNA)
curatedAdipoRNA.Rcheck/curatedAdipoRNA-Ex.timings
name | user | system | elapsed | |
adipo_counts | 0.563 | 0.035 | 0.599 | |