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Package 317/565HostnameOS / ArchBUILDCHECKBUILD BIN
lol 1.5.0
Yinyin Yuan
Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/lol
Last Changed Rev: 64680 / Revision: 66885
Last Changed Date: 2012-03-30 15:15:56 -0700 (Fri, 30 Mar 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
perceval Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: lol
Version: 1.5.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch lol_1.5.0.tar.gz
StartedAt: 2012-06-21 01:17:57 -0700 (Thu, 21 Jun 2012)
EndedAt: 2012-06-21 01:21:29 -0700 (Thu, 21 Jun 2012)
EllapsedTime: 212.2 seconds
RetCode: 0
Status:  OK 
CheckDir: lol.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/lol.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'lol/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'lol' version '1.5.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'lol' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'lasso.cv':
  'lasso.cv'

S3 methods shown with full name in documentation object 'lasso.multiSplit':
  'lasso.multiSplit'

S3 methods shown with full name in documentation object 'lasso.simultaneous':
  'lasso.simultaneous'

S3 methods shown with full name in documentation object 'lasso.stability':
  'lasso.stability'

S3 methods shown with full name in documentation object 'print.lol':
  'print.lol'

S3 methods shown with full name in documentation object 'print.lolMatrix':
  'print.lolMatrix'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/lol.Rcheck/00check.log'
for details.

lol.Rcheck/00install.out:

* installing *source* package 'lol' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'lol.Rnw' 
** testing if installed package can be loaded

* DONE (lol)

lol.Rcheck/lol-Ex.timings:

nameusersystemelapsed
chin070.2100.0220.264
getLambdaNcoef1.2440.1471.566
lasso3.2380.4233.768
lasso.cv3.2180.4253.681
lasso.multiSplit5.9610.1976.313
lasso.simultaneous6.0910.3256.466
lasso.stability3.1060.1983.326
lmMatrixFit26.809 2.40031.248
lol-package26.177 2.34928.817
matrixLasso26.124 2.37129.795
plotGW0.1560.0090.166