fdrame 1.29.0
Effi Kenigsberg
| Snapshot Date: 2012-06-20 15:22:40 -0700 (Wed, 20 Jun 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/fdrame | | Last Changed Rev: 64680 / Revision: 66885 | | Last Changed Date: 2012-03-30 15:15:56 -0700 (Fri, 30 Mar 2012) |
| lamb1 | Linux (openSUSE 12.1) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
| perceval | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/fdrame.Rcheck'
* using R version 2.15.0 Patched (2012-04-26 r59216)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'fdrame/DESCRIPTION' ... OK
* this is package 'fdrame' version '1.29.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'fdrame' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
OnBrowseDesign: no visible binding for global variable 'designFlag'
OnBrowseDesign: no visible binding for '<<-' assignment to 'designFlag'
OnBrowseDesign: no visible binding for '<<-' assignment to
'vector.list'
OnBrowseDesign: no visible binding for global variable 'vector.list'
OnBrowseDesign: no visible binding for '<<-' assignment to
'ttdesignlist'
OnBrowseDesign: no visible binding for '<<-' assignment to 'tl'
OnBrowseDesign: no visible binding for global variable 'ttdesignlist'
OnBrowseDesign: no visible binding for global variable 'tl'
OnBrowseDesign: no visible binding for global variable 'fdrtt'
OnBrowseInput: no visible binding for '<<-' assignment to
'filename.input.tk'
OnBrowseInput: no visible binding for global variable
'filename.input.tk'
OnBrowseInput: no visible binding for '<<-' assignment to
'filename.input'
OnBrowseInput: no visible binding for global variable
'entry.Filename.input'
OnBrowseInput: no visible binding for global variable 'filename.input'
OnBrowseOutput: no visible binding for '<<-' assignment to
'filename.output.tk'
OnBrowseOutput: no visible binding for global variable
'filename.output.tk'
OnBrowseOutput: no visible binding for '<<-' assignment to
'filename.output'
OnBrowseOutput: no visible binding for global variable
'entry.Filename.output'
OnBrowseOutput: no visible binding for global variable
'filename.output'
OnCancel: no visible binding for global variable 'ttdesignlist'
OnCancel: no visible binding for global variable 'fdrtt'
OnCancel: no visible binding for '<<-' assignment to 'designFlag'
OnCbfa1: no visible binding for global variable 'cbfa1Value'
OnCbfa1: no visible binding for '<<-' assignment to 'cbfa5Value'
OnCbfa1: no visible binding for global variable 'cbfa5'
OnCbfa2: no visible binding for global variable 'cbfa2Value'
OnCbfa2: no visible binding for '<<-' assignment to 'cbfa5Value'
OnCbfa2: no visible binding for global variable 'cbfa5'
OnCbfa3: no visible binding for global variable 'cbfa3Value'
OnCbfa3: no visible binding for '<<-' assignment to 'cbfa5Value'
OnCbfa3: no visible binding for global variable 'cbfa5'
OnCbfa4: no visible binding for global variable 'cbfa4Value'
OnCbfa4: no visible binding for '<<-' assignment to 'cbfa5Value'
OnCbfa4: no visible binding for global variable 'cbfa5'
OnCompute: no visible binding for global variable 'fdrtt'
OnCompute: no visible binding for global variable 'rbnoValue'
OnCompute: no visible binding for global variable 'rbfaValue'
OnCompute: no visible binding for global variable 'cbpl1Value'
OnCompute: no visible binding for global variable 'cbpl2Value'
OnCompute: no visible binding for global variable 'cbpl3Value'
OnCompute: no visible binding for global variable 'cbfa1Value'
OnCompute: no visible binding for global variable 'cbfa2Value'
OnCompute: no visible binding for global variable 'cbfa3Value'
OnCompute: no visible binding for global variable 'cbfa4Value'
OnCompute: no visible binding for global variable 'cbfa5Value'
OnCompute: no visible binding for global variable 'filename.input'
OnCompute: no visible binding for global variable 'filename.output'
OnCompute: no visible binding for global variable 'design.tcl'
OnCompute: no visible binding for global variable 'permsNum'
OnCompute: no visible binding for '<<-' assignment to 'a'
OnOK: no visible binding for global variable 'vector.list'
OnOK: no visible binding for global variable 'tl'
OnOK: no visible binding for global variable 'ttdesignlist'
OnOK: no visible binding for '<<-' assignment to 'designVal'
OnOK: no visible binding for '<<-' assignment to 'design.tcl'
OnOK: no visible binding for global variable 'entry.Design'
OnOK: no visible binding for global variable 'design.tcl'
OnOK: no visible binding for global variable 'fdrtt'
OnOK: no visible binding for '<<-' assignment to 'designFlag'
OnRbfa1: no visible binding for global variable 'cbfa1'
OnRbfa1: no visible binding for global variable 'cbfa2'
OnRbfa2: no visible binding for global variable 'cbfa1'
OnRbfa2: no visible binding for global variable 'cbfa2'
OnRbfa3: no visible binding for global variable 'cbfa1'
OnRbfa3: no visible binding for global variable 'cbfa2'
OnRbfa4: no visible binding for global variable 'cbfa1'
OnRbfa4: no visible binding for global variable 'cbfa2'
OnRbpm1: no visible binding for global variable 'entry.Perms'
OnRbpm2: no visible binding for global variable 'entry.Perms'
fdr.error: no visible binding for global variable 'fdrtt'
fdr.gui: no visible binding for '<<-' assignment to 'fdrtt'
fdr.gui: no visible binding for '<<-' assignment to 'designFlag'
fdr.gui: no visible binding for '<<-' assignment to 'frameOverall'
fdr.gui: no visible binding for global variable 'fdrtt'
fdr.gui: no visible binding for '<<-' assignment to 'frameCompute'
fdr.gui: no visible binding for global variable 'frameOverall'
fdr.gui: no visible binding for '<<-' assignment to 'frameInput'
fdr.gui: no visible binding for '<<-' assignment to 'frameOutput'
fdr.gui: no visible binding for '<<-' assignment to 'frameFileOutput'
fdr.gui: no visible binding for global variable 'frameOutput'
fdr.gui: no visible binding for '<<-' assignment to 'framePmethod'
fdr.gui: no visible binding for '<<-' assignment to 'frameNorm'
fdr.gui: no visible binding for global variable 'frameInput'
fdr.gui: no visible binding for '<<-' assignment to 'frameAdj'
fdr.gui: no visible binding for '<<-' assignment to 'framePerms'
fdr.gui: no visible binding for '<<-' assignment to 'frameplot'
fdr.gui: no visible binding for '<<-' assignment to 'filename.input'
fdr.gui: no visible binding for '<<-' assignment to 'filename.output'
fdr.gui: no visible binding for '<<-' assignment to 'design.tcl'
fdr.gui: no visible binding for '<<-' assignment to 'permsNum'
fdr.gui: no visible binding for '<<-' assignment to
'entry.Filename.input'
fdr.gui: no visible binding for global variable 'filename.input'
fdr.gui: no visible binding for '<<-' assignment to
'entry.Filename.output'
fdr.gui: no visible binding for global variable 'filename.output'
fdr.gui: no visible binding for '<<-' assignment to 'entry.Design'
fdr.gui: no visible binding for global variable 'design.tcl'
fdr.gui: no visible binding for '<<-' assignment to 'entry.Perms'
fdr.gui: no visible binding for global variable 'frameAdj'
fdr.gui: no visible binding for global variable 'permsNum'
fdr.gui: no visible binding for '<<-' assignment to 'rbpm1'
fdr.gui: no visible binding for global variable 'framePmethod'
fdr.gui: no visible binding for '<<-' assignment to 'rbpm2'
fdr.gui: no visible binding for '<<-' assignment to 'rbno1'
fdr.gui: no visible binding for '<<-' assignment to 'rbno2'
fdr.gui: no visible binding for '<<-' assignment to 'rbfa1'
fdr.gui: no visible binding for '<<-' assignment to 'rbfa2'
fdr.gui: no visible binding for '<<-' assignment to 'rbfa3'
fdr.gui: no visible binding for '<<-' assignment to 'rbfa4'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl1'
fdr.gui: no visible binding for global variable 'frameplot'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl2'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl3'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa1'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa2'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa3'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa4'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa5'
fdr.gui: no visible binding for '<<-' assignment to 'rbpmValue'
fdr.gui: no visible binding for '<<-' assignment to 'rbnoValue'
fdr.gui: no visible binding for '<<-' assignment to 'rbfaValue'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl1Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl2Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbpl3Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa1Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa2Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa3Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa4Value'
fdr.gui: no visible binding for '<<-' assignment to 'cbfa5Value'
fdr.gui: no visible binding for global variable 'rbpm1'
fdr.gui: no visible binding for global variable 'rbpmValue'
fdr.gui: no visible binding for global variable 'rbpm2'
fdr.gui: no visible binding for global variable 'rbno1'
fdr.gui: no visible binding for global variable 'rbnoValue'
fdr.gui: no visible binding for global variable 'rbno2'
fdr.gui: no visible binding for global variable 'rbfa1'
fdr.gui: no visible binding for global variable 'rbfaValue'
fdr.gui: no visible binding for global variable 'rbfa2'
fdr.gui: no visible binding for global variable 'rbfa3'
fdr.gui: no visible binding for global variable 'rbfa4'
fdr.gui: no visible binding for global variable 'cbpl1'
fdr.gui: no visible binding for global variable 'cbpl1Value'
fdr.gui: no visible binding for global variable 'cbpl2'
fdr.gui: no visible binding for global variable 'cbpl2Value'
fdr.gui: no visible binding for global variable 'cbpl3'
fdr.gui: no visible binding for global variable 'cbpl3Value'
fdr.gui: no visible binding for global variable 'cbfa1'
fdr.gui: no visible binding for global variable 'cbfa1Value'
fdr.gui: no visible binding for global variable 'cbfa2'
fdr.gui: no visible binding for global variable 'cbfa2Value'
fdr.gui: no visible binding for global variable 'cbfa3'
fdr.gui: no visible binding for global variable 'cbfa3Value'
fdr.gui: no visible binding for global variable 'cbfa4'
fdr.gui: no visible binding for global variable 'cbfa4Value'
fdr.gui: no visible binding for global variable 'cbfa5'
fdr.gui: no visible binding for global variable 'cbfa5Value'
fdr.gui: no visible binding for global variable 'entry.Perms'
fdr.gui: no visible binding for '<<-' assignment to 'BrowseInput.but'
fdr.gui: no visible binding for '<<-' assignment to 'BrowseDesign.but'
fdr.gui: no visible binding for '<<-' assignment to 'BrowseOutput.but'
fdr.gui: no visible binding for '<<-' assignment to 'Compute.but'
fdr.gui: no visible binding for global variable 'frameCompute'
fdr.gui: no visible binding for '<<-' assignment to 'Help.but'
fdr.gui: no visible binding for global variable 'entry.Filename.input'
fdr.gui: no visible binding for global variable 'BrowseInput.but'
fdr.gui: no visible binding for global variable 'entry.Design'
fdr.gui: no visible binding for global variable 'BrowseDesign.but'
fdr.gui: no visible binding for global variable 'entry.Filename.output'
fdr.gui: no visible binding for global variable 'BrowseOutput.but'
fdr.gui: no visible binding for global variable 'Help.but'
fdr.gui: no visible binding for global variable 'Compute.but'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'/Users/biocbuild/bbs-2.11-bioc/meat/fdrame.Rcheck/00check.log'
for details.
* installing *source* package 'fdrame' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c fdr.c -o fdr.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o fdrame.so fdr.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/fdrame.Rcheck/fdrame/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'fdrame.Rnw'
** testing if installed package can be loaded
* DONE (fdrame)