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Package 215/554HostnameOS / ArchBUILDCHECKBUILD BIN
GeneRfold 1.15.0
Antoine Lucas
Snapshot Date: 2012-03-30 18:21:29 -0700 (Fri, 30 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneRfold
Last Changed Rev: 64680 / Revision: 64689
Last Changed Date: 2012-03-30 15:15:56 -0700 (Fri, 30 Mar 2012)
lamb1 Linux (openSUSE 12.1) / x86_64  ERROR  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: GeneRfold
Version: 1.15.0
Command: /Library/Frameworks/R.framework/Versions/2.15/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GeneRfold_1.15.0.tar.gz
StartedAt: 2012-03-31 10:18:01 -0700 (Sat, 31 Mar 2012)
EndedAt: 2012-03-31 10:18:24 -0700 (Sat, 31 Mar 2012)
EllapsedTime: 22.8 seconds
RetCode: 0
Status:  OK 
CheckDir: GeneRfold.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.11-bioc/meat/GeneRfold.Rcheck'
* using R version 2.15.0 RC (2012-03-23 r58819)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GeneRfold/DESCRIPTION' ... OK
* this is package 'GeneRfold' version '1.15.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'GeneRfold' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  CeCILL-2.0
Standardizable: TRUE
Standardized license specification:
  CeCILL-2
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  '/Users/biocbuild/bbs-2.11-bioc/meat/GeneRfold.Rcheck/00check.log'
for details.

GeneRfold.Rcheck/00install.out:

* installing *source* package 'GeneRfold' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include -I/Library/Frameworks/R.framework/Versions/2.15/Resources/include/i386 -DNDEBUG -I/usr/local/include/  -fPIC -Wno-conversion -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic  -c viennaR.c -o viennaR.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.11-bioc/meat/GeneRfold.Rcheck/GeneRfold/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'GeneRfold.Rnw' 
** testing if installed package can be loaded

* DONE (GeneRfold)

GeneRfold.Rcheck/GeneRfold-Ex.timings:

nameusersystemelapsed
fold0.0160.0020.019
rnaplot0.0150.0010.017