Package: EasyqpcR

Version: 1.2.0

Command: /home/biocbuild/bbs-2.11-bioc/R/bin/R CMD check --no-vignettes --timings EasyqpcR_1.2.0.tar.gz

StartedAt: 2013-03-25 00:47:55 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 00:48:19 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 24.5 seconds

RetCode: 0

Status:  OK

CheckDir: EasyqpcR.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.11-bioc/meat/EasyqpcR.Rcheck’
* using R version 2.15.3 (2013-03-01)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘EasyqpcR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘EasyqpcR’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘EasyqpcR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘EasyqpcR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘vignette_EasyqpcR.Rnw’ 
** testing if installed package can be loaded

* DONE (EasyqpcR)

name	user	system	elapsed
Efficiency_calculation	0.020	0.000	0.019
Gene_maximisation	0.008	0.000	0.006
Gene_maximisation_cor	0.004	0.000	0.002
badCt	0.028	0.000	0.030
calData	0.356	0.008	0.366
nrmData	0.132	0.004	0.135
qPCR_run1	0.000	0.000	0.002
qPCR_run2	0.000	0.000	0.003
qPCR_run3	0.000	0.000	0.001
slope	0.012	0.000	0.013
totData	0.572	0.008	0.588