Package | Description |
---|---|
pal.datatype |
Classes describing data types (nucleotides, amino acids, codons, codon tables etc.)
|
Modifier and Type | Class and Description |
---|---|
class |
AminoAcids
implements DataType for amino acids
|
class |
Codons
implements DataType for all Codons (including terminators).
|
class |
GapBalanced
implements a ResidueDataType for GapBalanced notation.
|
class |
IUPACNucleotides
implements DataType for nucleotides with ambiguous characters
|
class |
Nucleotides
implements DataType for nucleotides
|
class |
NumericDataType
This datatype stores numeric values.
|
class |
SpecificAminoAcids
implements a MolecularDataType for amino acids, where we specifiy the Codon Table basis of amino acid by
supplying the CodonTable which is/was used for converting Nucleotide sequences to Amino Acids.
|
class |
StateRemover
A standard data type, but with characters removed
|
class |
TwoStates
implements DataType for two-state data
|