pal.alignment
Interfaces
Alignment
AlignmentGenerator
AlignmentReceiver
AnnotationAlignment
CharacterAlignment
Classes
AbstractAlignment
AlignmentBuilder
AlignmentGenerator.Utils
AlignmentReaders
AlignmentReaders.PhylipClustalAlignment
AlignmentReaders.UnalignedAlignment
AlignmentReceiver.BucketReceiver
AlignmentReceiver.SingleReceiver
AlignmentTool
AlignmentUtils
BootstrappedAlignment
ConcatenatedAlignment
ConcatenatedAnnotatedAlignment
DataTranslator
GapBalancedAlignment
Genotype
IndelAlignment
IndelAnnotatedAlignment
JumbledAlignment
MultiLocusAnnotatedAlignment
ReadAlignment
ReadAlignmentOld
SimpleAlignment
SimpleAnnotatedAlignment
SimpleCharacterAlignment
SitePattern
StrippedAlignment
StrippedAnnotatedAlignment
Exceptions
AlignmentParseException