volcano3D: 3D Volcano Plots and Polar Plots for Three-Class Data

Generates interactive plots for analysing and visualising three-class high dimensional data. It is particularly suited to visualising differences in continuous attributes such as gene/protein/biomarker expression levels between three groups. Differential gene/biomarker expression analysis between two classes is typically shown as a volcano plot. However, with three groups this type of visualisation is particularly difficult to interpret. This package generates 3D volcano plots and 3-way polar plots for easier interpretation of three-class data.

Version: 2.0.9
Depends: R (≥ 3.5)
Imports: plotly, ggplot2, ggpubr, htmlwidgets, magrittr, methods, Rfast, rlang, matrixTests
Suggests: DESeq2, edgeR, limma, qvalue, SummarizedExperiment, knitr, rmarkdown, kableExtra, usethis, easylabel
Published: 2023-05-17
DOI: 10.32614/CRAN.package.volcano3D
Author: Katriona Goldmann ORCID iD [aut, cre], Myles Lewis ORCID iD [aut]
Maintainer: Katriona Goldmann <katrionagoldmann at gmail.com>
BugReports: https://github.com/KatrionaGoldmann/volcano3D/issues
License: GPL-2
URL: https://katrionagoldmann.github.io/volcano3D/index.html, https://github.com/KatrionaGoldmann/volcano3D
NeedsCompilation: no
Language: en-gb
Materials: NEWS
In views: Omics
CRAN checks: volcano3D results

Documentation:

Reference manual: volcano3D.html , volcano3D.pdf
Vignettes: volcano3D (source, R code)
2x3-way analysis (source, R code)

Downloads:

Package source: volcano3D_2.0.9.tar.gz
Windows binaries: r-devel: volcano3D_2.0.9.zip, r-release: volcano3D_2.0.9.zip, r-oldrel: volcano3D_2.0.9.zip
macOS binaries: r-release (arm64): volcano3D_2.0.9.tgz, r-oldrel (arm64): volcano3D_2.0.9.tgz, r-release (x86_64): volcano3D_2.0.9.tgz, r-oldrel (x86_64): volcano3D_2.0.9.tgz
Old sources: volcano3D archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=volcano3D to link to this page.