## ----include = FALSE---------------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) ## ----here, echo = FALSE, eval = FALSE----------------------------------------- # path <- fs::path("tests", "testthat", "apps", "NOAA_app", "tests", "shinytest", # "mytest-expected") # path <- fs::path_package("oceanexplorer", path) # fig1 <- fs::path(path, "001", ext = "png") # fig2 <- fs::path(path, "002", ext = "png") # fig3 <- fs::path(path, "003", ext = "png") # # fs::file_copy(fig1, "vignettes/get-started-screenshot1.png", overwrite = TRUE) # fs::file_copy(fig2, "vignettes/get-started-screenshot2.png", overwrite = TRUE) # fs::file_copy(fig3, "vignettes/get-started-screenshot3.png", overwrite = TRUE) ## ----screenstart, echo = FALSE, out.width="90%"------------------------------- knitr::include_graphics("get-started-screenshot1.png") ## ----screenselect, echo = FALSE, out.width="90%"------------------------------ knitr::include_graphics("get-started-screenshot2.png") ## ----screenextract, echo = FALSE, out.width="90%"----------------------------- knitr::include_graphics("get-started-screenshot3.png") ## ----screenaddin, echo = FALSE, out.width="90%"------------------------------- knitr::include_graphics("get-started-screenshot4.png") ## ----setup, eval=interactive(), error=TRUE------------------------------------ # # load package # library(oceanexplorer) # # get data # (WOA <- get_NOAA("phosphate", 1, "December")) ## ----plot1, fig.width=7, eval = interactive() && exists("WOA")---------------- # plot_NOAA(WOA, depth = 1000) ## ----save1, echo=FALSE, eval = interactive() && exists("WOA"), message=FALSE---- # ggplot2::ggsave("NOAA_plot1.png", plot_NOAA(WOA, depth = 1000), width = 9) ## ----graph1, echo=FALSE, eval = !exists("WOA"), out.width="100%"-------------- knitr::include_graphics("NOAA_plot1.png") ## ----filter, eval=interactive()----------------------------------------------- # (pts <- filter_NOAA(WOA, depth = 1000, coord = list(lon = 20, lat = -46))) ## ----plot2, fig.width=7, eval = interactive() && exists("WOA")---------------- # plot_NOAA(WOA, depth = 1000, points = pts) ## ----save2, echo=FALSE, eval = interactive() && exists("WOA"), message=FALSE---- # ggplot2::ggsave("NOAA_plot2.png", plot_NOAA(WOA, depth = 1000, points = pts), width = 9) ## ----graph2, echo=FALSE, eval = !exists("WOA"), out.width="100%"-------------- knitr::include_graphics("NOAA_plot2.png")