- Renamed exported function
best_reconstruction_QP to
find_best_reconstruction_QP.
- Added function
optimize_exposure_QP.
- Added
best_reconstruction_QP.
- Fixed a bug in function
sig_dist_matrix when in some
very rare cases, some cosine similarities can be slightly greater than
1.
- Fixed a bug in function
plot_exposure_internal not to
plot sample names when there are no column names
inexposure.
- Removed package
PCAWG7 from Suggests field in
DESCRIPTION. Added ICAMS as suggested package.
- Added new dependency package
sets as it is required in
function best_reconstruction_QP.
- Updated test functions in tests/testthat/ folder.
- Fixed test in test_exposure_related_functions.R.
- Added return value for exported functions
match_two_sig_sets and write_exposure.
- Added reference for “Hungarian algorithm” in package
DESCRIPTION.
- Updated documentation for function
TP_FP_FN_avg_sim.