jSDM: Joint Species Distribution Models
Fits joint species distribution models ('jSDM') in a hierarchical Bayesian framework (Warton and al. 2015 <doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written in 'C++'. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.
| Version: | 0.2.6 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 1.0.0), graphics, stats, coda, corrplot, stringi, MASS, parallel, doParallel, foreach, methods |
| LinkingTo: | Rcpp, RcppArmadillo, RcppGSL |
| Suggests: | knitr, kableExtra, terra, dplyr, rmarkdown, bookdown, testthat (≥ 3.0.0), boral, Hmsc, BayesComm, snow, snowfall, ggplot2, covr, ape, gstat |
| Published: | 2023-07-22 |
| DOI: | 10.32614/CRAN.package.jSDM |
| Author: | Jeanne Clément 
[aut, cre],
Ghislain Vieilledent
[aut],
Frédéric Gosselin
[ctb],
CIRAD [cph, fnd] |
| Maintainer: | Jeanne Clément <jeanne.clement16 at laposte.net> |
| BugReports: | https://github.com/ghislainv/jSDM/issues |
| License: | GPL-3 |
| URL: | https://ecology.ghislainv.fr/jSDM/, https://github.com/ghislainv/jSDM |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU GSL |
| Materials: | README, NEWS |
| CRAN checks: | jSDM results [issues need fixing before 2025-10-23] |
Documentation:
| Reference manual: | jSDM.html , jSDM.pdf |
| Vignettes: |
Get started with jSDM (source, R code) Bayesian inference methods (source, R code) |
Downloads:
| Package source: | jSDM_0.2.6.tar.gz |
| Windows binaries: | r-devel: jSDM_0.2.6.zip, r-release: jSDM_0.2.6.zip, r-oldrel: jSDM_0.2.6.zip |
| macOS binaries: | r-release (arm64): jSDM_0.2.6.tgz, r-oldrel (arm64): jSDM_0.2.6.tgz, r-release (x86_64): jSDM_0.2.6.tgz, r-oldrel (x86_64): jSDM_0.2.6.tgz |
| Old sources: | jSDM archive |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=jSDM to link to this page.