detrendr: Detrend Images
Detrend fluorescence microscopy image series for fluorescence fluctuation and correlation spectroscopy ('FCS' and 'FFS') analysis. This package contains functionality published in a 2016 paper <doi:10.1093/bioinformatics/btx434> but it has been extended since then with the Robin Hood algorithm and thus contains unpublished work.
| Version: | 0.6.15 |
| Depends: | R (≥ 3.1) |
| Imports: | arrayhelpers (≥ 1.1.0), autothresholdr (≥ 1.3.11), checkmate (≥ 1.9.3), doParallel, dplyr, filesstrings (≥ 3.2.4), foreach, ijtiff (≥ 2.2), iterators, magrittr (≥ 1.5), parallel, plyr, purrr, Rcpp (≥ 1.0.10), RcppParallel (≥ 5.1.7), rlang (≥ 0.3.3), stringr (≥ 1.4), tools, withr (≥ 2.1) |
| LinkingTo: | Rcpp (≥ 1.0.10), RcppParallel (≥ 5.1.7) |
| Suggests: | abind, covr, ggplot2, glue (≥ 1.3.0), graphics, gridExtra, knitr, lattice, MASS, matrixStats, mgcv, pacman, R.utils, rmarkdown, spelling, testthat (≥ 3.0), tidyr |
| Published: | 2023-03-04 |
| DOI: | 10.32614/CRAN.package.detrendr |
| Author: | Rory Nolan  [aut,
cre],
Luis Alvarez
[ctb, cph],
Sergi Padilla-Parra
[ctb, ths,
cph] |
| Maintainer: | Rory Nolan <rorynoolan at gmail.com> |
| BugReports: | https://github.com/rorynolan/detrendr/issues |
| License: | BSD_3_clause + file LICENSE |
| URL: | https://rorynolan.github.io/detrendr/, https://github.com/rorynolan/detrendr#readme |
| NeedsCompilation: | yes |
| SystemRequirements: | GNU make |
| Language: | en-US |
| Citation: | detrendr citation info |
| Materials: | README, NEWS |
| CRAN checks: | detrendr results |
Documentation:
| Reference manual: | detrendr.html , detrendr.pdf |
| Vignettes: |
Batch mode (source, R code) Linescan data (source, R code) Detrending single images (source, R code) |
Downloads:
| Package source: | detrendr_0.6.15.tar.gz |
| Windows binaries: | r-devel: detrendr_0.6.15.zip, r-release: detrendr_0.6.15.zip, r-oldrel: detrendr_0.6.15.zip |
| macOS binaries: | r-release (arm64): detrendr_0.6.15.tgz, r-oldrel (arm64): detrendr_0.6.15.tgz, r-release (x86_64): detrendr_0.6.15.tgz, r-oldrel (x86_64): detrendr_0.6.15.tgz |
| Old sources: | detrendr archive |
Reverse dependencies:
| Reverse imports: | nandb |
Linking:
Please use the canonical form https://CRAN.R-project.org/package=detrendr to link to this page.