Last updated on 2025-12-07 10:51:03 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| BIGDAWG | 1 | 3 | 9 | |
| HLAtools | 1 | 12 | ||
| pould | 1 | 12 |
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 3.0.3
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Steve Mack <Steven.Mack@ucsf.edu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Derek",
family = "Pappas",
role = "aut",
email = "djpappas75@gmail.com"),
person(given = "Steve",
family = "Mack",
role = c("aut", "cre"),
email = "Steven.Mack@ucsf.edu"),
person(given = "Jill",
family = "Hollenbach",
role = "aut",
email = "Jill.Hollenbach@ucsf.edu"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 3.0.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘haplo.stats’
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 3.0.3
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘httr’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: WARN: 1, OK: 12
Version: 1.6.3
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.6.3
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, NOTE: 12
Version: 1.0.1
Check: Rd files
Result: NOTE
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.heat.map.Rd:5: Lost braces; missing escapes or markup?
5 | \title{Generates heat-maps for four linkage disequilibrium (LD) values ({D'}, {Wn}, {WLoc1/Loc2} and {WLoc2/Loc1}) generated for all pairs of phased and unphased two-locus haplotypes by LDWrap().}
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:27: Lost braces; missing escapes or markup?
27 | Applies binom.test() to pairs of {D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and number of haplotypes values in the *_LD_results.csv files generated by LDWrap().
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) LD.sign.test.Rd:24: Lost braces; missing escapes or markup?
24 | A data frame of five columns ({D'}, {Wn}, {WLoc1/Loc2}, {WLoc2/Loc1} and N_Haplotypes) and four rows (#unphased > phased, #unphased = phased, #locus pairs and p-values).
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
checkRd: (-1) cALD.Rd:33: Lost braces; missing escapes or markup?
33 | A vector of {D'}, {Wn}, {WLocus2/Locus1}, {WLocus1/Locus2} values, and the number of haplotypes evaluated
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.1
Check: package dependencies
Result: ERROR
Packages required but not available: 'haplo.stats', 'gap', 'BIGDAWG'
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc