CRAN Package Check Results for Maintainer ‘Shubh Saraswat <shubh.saraswat00 at gmail.com>’

Last updated on 2025-12-07 10:51:02 CET.

Package	ERROR	OK
CytoProfile	3	10

Package CytoProfile

Current CRAN status: ERROR: 3, OK: 10

Version: 0.2.2
Check: package dependencies
Result: ERROR Package required but not available: ‘mixOmics’ Packages suggested but not available for checking: 'spelling', 'knitr', 'rmarkdown', 'devtools' VignetteBuilder package required for checking but not installed: ‘knitr’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘getting_started.Rmd’ using rmarkdown Warning: ggrepel: 6 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 2 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from getting_started.Rmd:316-338 [ML1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `confusionMatrix.default()`: ! The data must contain some levels that overlap the reference. --- Backtrace: ▆ 1. └─CytoProfile::cyt_xgb(...) 2. ├─caret::confusionMatrix(as.factor(cv_pred_labels), as.factor(actual_labels)) 3. └─caret:::confusionMatrix.default(as.factor(cv_pred_labels), as.factor(actual_labels)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'getting_started.Rmd' failed with diagnostics: The data must contain some levels that overlap the reference. --- failed re-building ‘getting_started.Rmd’ SUMMARY: processing the following file failed: ‘getting_started.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Version: 0.2.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'getting_started.Rmd' using rmarkdown Warning: ggrepel: 6 unlabeled data points (too many overlaps). Consider increasing max.overlaps Warning: ggrepel: 2 unlabeled data points (too many overlaps). Consider increasing max.overlaps Quitting from getting_started.Rmd:316-338 [ML1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `confusionMatrix.default()`: ! The data must contain some levels that overlap the reference. --- Backtrace: ▆ 1. └─CytoProfile::cyt_xgb(...) 2. ├─caret::confusionMatrix(as.factor(cv_pred_labels), as.factor(actual_labels)) 3. └─caret:::confusionMatrix.default(as.factor(cv_pred_labels), as.factor(actual_labels)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'getting_started.Rmd' failed with diagnostics: The data must contain some levels that overlap the reference. --- failed re-building 'getting_started.Rmd' SUMMARY: processing the following file failed: 'getting_started.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-oldrel-windows-x86_64