Last updated on 2026-01-17 11:49:54 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 37.32 | 807.95 | 845.27 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 21.55 | 533.73 | 555.28 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 63.00 | 1301.41 | 1364.41 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 59.00 | 1153.46 | 1212.46 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 37.00 | 585.00 | 622.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 50.91 | 731.70 | 782.61 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 38.01 | 740.60 | 778.61 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 542.00 | 579.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 120.00 | 128.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 753.00 | 778.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 51.00 | 671.00 | 722.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [110s/54s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-17 19:58:31.460481: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.460698: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.46331: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.468738: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:31.48232: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.482477: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.48502: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.491162: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:31.498761: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.498948: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.503608: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.518388: embedding
> test_pipeop_isomap.R: 2026-01-17 19:58:31.518754: DONE
> test_pipeop_isomap.R: 2026-01-17 19:58:31.525567: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.525731: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.530421: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.545061: embedding
> test_pipeop_isomap.R: 2026-01-17 19:58:31.545484: DONE
> test_pipeop_isomap.R: 2026-01-17 19:58:31.575377: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.575563: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.580162: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.614349: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:31.627119: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.627352: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.63608: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.713953: embedding
> test_pipeop_isomap.R: 2026-01-17 19:58:31.715076: DONE
> test_pipeop_isomap.R: 2026-01-17 19:58:31.751336: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.751471: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.75385: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.760166: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:31.779019: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.779238: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.783982: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.798754: embedding
> test_pipeop_isomap.R: 2026-01-17 19:58:31.799172: DONE
> test_pipeop_isomap.R: 2026-01-17 19:58:31.831975: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.832122: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.834539: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.840896: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:31.853849: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.854046: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.858674: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.873802: embedding
> test_pipeop_isomap.R: 2026-01-17 19:58:31.874271: DONE
> test_pipeop_isomap.R: 2026-01-17 19:58:31.896733: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.896911: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.899175: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.905361: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:31.927279: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.927538: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.932869: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.948711: embedding
> test_pipeop_isomap.R: 2026-01-17 19:58:31.949252: DONE
> test_pipeop_isomap.R: 2026-01-17 19:58:31.970557: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.970707: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.973252: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:31.979486: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:31.993526: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 19:58:31.993763: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:31.998981: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:32.014217: embedding
> test_pipeop_isomap.R: 2026-01-17 19:58:32.014639: DONE
> test_pipeop_isomap.R: 2026-01-17 19:58:32.03489: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:32.035047: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:32.03772: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:32.043901: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:32.057497: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 19:58:32.057689: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:32.068917: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:32.085097: embedding
> test_pipeop_isomap.R: 2026-01-17 19:58:32.085629: DONE
> test_pipeop_isomap.R: 2026-01-17 19:58:32.112973: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:32.113136: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:32.115628: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:32.122203: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:32.145236: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:32.145395: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:32.147842: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:32.154387: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 19:58:32.161361: Isomap START
> test_pipeop_isomap.R: 2026-01-17 19:58:32.161504: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 19:58:32.164161: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 19:58:32.17021: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [323s/428s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-17 02:45:16.898054: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:16.898621: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:16.919079: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:16.975033: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:17.142423: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:17.142729: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:17.201667: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:17.252129: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:17.314967: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 02:45:17.315434: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:17.371246: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:17.500838: embedding
> test_pipeop_isomap.R: 2026-01-17 02:45:17.546136: DONE
> test_pipeop_isomap.R: 2026-01-17 02:45:17.618635: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 02:45:17.61897: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:17.691463: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:17.777914: embedding
> test_pipeop_isomap.R: 2026-01-17 02:45:17.779296: DONE
> test_pipeop_isomap.R: 2026-01-17 02:45:17.999286: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:17.999581: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:18.055904: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:18.402293: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:18.462119: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 02:45:18.46258: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:18.568088: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:19.239865: embedding
> test_pipeop_isomap.R: 2026-01-17 02:45:19.243476: DONE
> test_pipeop_isomap.R: 2026-01-17 02:45:19.692586: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:19.692901: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:19.701592: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:19.760665: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:19.85955: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 02:45:19.859982: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:19.889042: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:20.029114: embedding
> test_pipeop_isomap.R: 2026-01-17 02:45:20.030547: DONE
> test_pipeop_isomap.R: 2026-01-17 02:45:20.342444: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:20.342744: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:20.349594: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:20.407975: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:20.534048: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 02:45:20.534528: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:20.575744: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:20.725123: embedding
> test_pipeop_isomap.R: 2026-01-17 02:45:20.72626: DONE
> test_pipeop_isomap.R: 2026-01-17 02:45:20.93323: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:20.933545: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:20.940486: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:21.016873: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:21.077814: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 02:45:21.137157: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:21.188542: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:21.313026: embedding
> test_pipeop_isomap.R: 2026-01-17 02:45:21.314261: DONE
> test_pipeop_isomap.R: 2026-01-17 02:45:21.512105: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:21.51241: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:21.53912: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:21.61522: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:21.712244: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 02:45:21.712692: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:21.836905: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:21.951744: embedding
> test_pipeop_isomap.R: 2026-01-17 02:45:21.95392: DONE
> test_pipeop_isomap.R: 2026-01-17 02:45:22.152423: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:22.152744: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:22.192053: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:22.245312: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:22.313355: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-17 02:45:22.313818: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:22.412075: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:22.517032: embedding
> test_pipeop_isomap.R: 2026-01-17 02:45:22.518561: DONE
> test_pipeop_isomap.R: 2026-01-17 02:45:22.727076: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:22.727389: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:22.734301: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:22.845316: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:23.014189: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:23.014481: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:23.060408: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:23.119571: Classical Scaling
> test_pipeop_isomap.R: 2026-01-17 02:45:23.168794: Isomap START
> test_pipeop_isomap.R: 2026-01-17 02:45:23.169139: constructing knn graph
> test_pipeop_isomap.R: 2026-01-17 02:45:23.179846: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-17 02:45:23.267948: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.7880236')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [290s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-16 16:16:45.815526: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.816596: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:45.830182: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:45.85286: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:45.924012: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.924484: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:45.932784: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:45.954529: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:45.98782: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:45.988521: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.012046: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.061949: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.063834: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.115601: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.116369: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.141883: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.192334: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.194562: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.309377: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.31006: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.334583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.447183: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:46.491673: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.492318: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.534133: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.734709: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:46.739824: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:46.956391: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:46.956832: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:46.963703: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:46.979221: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.01364: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.01425: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.029205: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.065929: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.06718: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.259106: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.25977: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.270811: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.293168: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.3869: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.38753: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.402279: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.437225: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.43836: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.541812: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.542424: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.554538: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.577187: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.654275: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.655185: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.679313: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.729601: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:47.731512: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:47.830133: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.830653: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.841836: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.86317: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:47.935614: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:47.936472: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:47.958377: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:47.998494: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:48.000015: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:48.124603: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.125084: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.134392: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.149473: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.212644: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.213604: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.23658: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.285648: embedding
> test_pipeop_isomap.R: 2026-01-16 16:16:48.287417: DONE
> test_pipeop_isomap.R: 2026-01-16 16:16:48.423782: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.424429: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.436787: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.458976: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.576937: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.577575: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.588312: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.60597: Classical Scaling
> test_pipeop_isomap.R: 2026-01-16 16:16:48.644312: Isomap START
> test_pipeop_isomap.R: 2026-01-16 16:16:48.645016: constructing knn graph
> test_pipeop_isomap.R: 2026-01-16 16:16:48.656383: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-16 16:16:48.679226: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64