CRAN Package Check Results for Maintainer Kevin R. Coombes <krc at silicovore.com>

CRAN Package Check Results for Maintainer ‘Kevin R. Coombes <krc at silicovore.com>’

Last updated on 2026-02-03 12:51:52 CET.

Package	NOTE	OK
BimodalIndex		13
ClassComparison		13
ClassDiscovery		13
CloneSeeker	5	8
CrossValidate		13
GenAlgo		13
integIRTy		13
Mercator		13
Modeler		13
NameNeedle		13
NewmanOmics		13
oompaBase		13
oompaData		13
PCDimension		13
plasma		13
Polychrome		13
PreProcess		13
RCytoGPS		13
RPointCloud		13
SIBERG		13
SillyPutty		13
SVAlignR		13
TailRank		13
Thresher		13
Umpire		13
WayFindR		13

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [2s/4s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ [3s/4s] Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [36s/45s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 233,236c233,236 < 1st Qu.: 61.00 N.unique : 1 < Median : 70.00 N.blank : 0 < Mean : 70.24 Min.nchar: 8 < 3rd Qu.: 80.00 Max.nchar: 8 --- > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running ‘test04-algorithm.R’ [94s/143s] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ... 148c148 < NA NA NA NaN NA NA --- > 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar:NA < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:NA --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [2s/2s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ [2s/2s] Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [21s/25s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 233,236c233,236 < 1st Qu.: 61.00 N.unique : 1 < Median : 70.00 N.blank : 0 < Mean : 70.24 Min.nchar: 8 < 3rd Qu.: 80.00 Max.nchar: 8 --- > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running ‘test04-algorithm.R’ [55s/68s] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ... 148c148 < NA NA NA NaN NA NA --- > 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar:NA < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:NA --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [4s/12s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [62s/207s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 233,236c233,236 < 1st Qu.: 61.00 N.unique : 1 < Median : 70.00 N.blank : 0 < Mean : 70.24 Min.nchar: 8 < 3rd Qu.: 80.00 Max.nchar: 8 --- > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running ‘test04-algorithm.R’ [170s/460s] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ... 148c148 < NA NA NA NaN NA NA --- > 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar:NA < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:NA --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.13
Check: tests
Result: NOTE Running ‘test01-Simplex.R’ [4s/18s] Comparing ‘test01-Simplex.Rout’ to ‘test01-Simplex.Rout.save’ ... OK Running ‘test02-WV.R’ [4s/15s] Comparing ‘test02-WV.Rout’ to ‘test02-WV.Rout.save’ ... OK Running ‘test03-simulate.R’ [62s/221s] Comparing ‘test03-simulate.Rout’ to ‘test03-simulate.Rout.save’ ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 233,236c233,236 < 1st Qu.: 61.00 N.unique : 1 < Median : 70.00 N.blank : 0 < Mean : 70.24 Min.nchar: 8 < 3rd Qu.: 80.00 Max.nchar: 8 --- > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running ‘test04-algorithm.R’ [3m/11m] Comparing ‘test04-algorithm.Rout’ to ‘test04-algorithm.Rout.save’ ... 148c148 < NA NA NA NaN NA NA --- > 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar:NA < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:NA --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.0.13
Check: tests
Result: NOTE Running 'test01-Simplex.R' [2s] Comparing 'test01-Simplex.Rout' to 'test01-Simplex.Rout.save' ... OK Running 'test02-WV.R' [2s] Comparing 'test02-WV.Rout' to 'test02-WV.Rout.save' ... OK Running 'test03-simulate.R' [28s] Comparing 'test03-simulate.Rout' to 'test03-simulate.Rout.save' ... 69c69 < NAs :428 --- > NA's :428 71c71 < Mode NAs --- > Mode NA's 127c127 < NAs :282 --- > NA's :282 129c129 < Mode NAs --- > Mode NA's 151c151 < NAs :340 --- > NA's :340 230c230 < NAs :1e+06 --- > NA's :1e+06 232,236c232,236 < Min. : 12.00 Length :1e+06 < 1st Qu.: 61.00 N.unique :1e+00 < Median : 70.00 N.blank :0e+00 < Mean : 70.24 Min.nchar:8e+00 < 3rd Qu.: 80.00 Max.nchar:8e+00 --- > Min. : 12.00 Length:1000000 > 1st Qu.: 61.00 Class :character > Median : 70.00 Mode :character > Mean : 70.24 > 3rd Qu.: 80.00 Running 'test04-algorithm.R' [73s] Comparing 'test04-algorithm.Rout' to 'test04-algorithm.Rout.save' ... 161,164c161,164 < 1st Qu.: NA 1st Qu.: NA N.unique : 0 < Median : NA Median : NA N.blank : 0 < Mean :NaN Mean :NaN Min.nchar: Inf < 3rd Qu.: NA 3rd Qu.: NA Max.nchar:-Inf --- > 1st Qu.: NA 1st Qu.: NA Class :character > Median : NA Median : NA Mode :character > Mean :NaN Mean :NaN > 3rd Qu.: NA 3rd Qu.: NA 181c181 < Mode NAs --- > Mode NA's 229,232c229,232 < 1st Qu.:0.2914 1st Qu.:122.2 N.unique : 1 < Median :0.3333 Median :131.5 N.blank : 0 < Mean :0.3375 Mean :137.0 Min.nchar: 7 < 3rd Qu.:0.3632 3rd Qu.:156.0 Max.nchar: 7 --- > 1st Qu.:0.2914 1st Qu.:122.2 Class :character > Median :0.3333 Median :131.5 Mode :character > Mean :0.3375 Mean :137.0 > 3rd Qu.:0.3632 3rd Qu.:156.0 244,246d243 < Warning messages: < 1: In min(ncs) : no non-missing arguments to min; returning Inf < 2: In max(ncs) : no non-missing arguments to max; returning -Inf Flavor: r-devel-windows-x86_64