CRAN Package Check Results for Maintainer Guangchuang Yu <guangchuangyu at gmail.com>

CRAN Package Check Results for Maintainer ‘Guangchuang Yu <guangchuangyu at gmail.com>’

Last updated on 2026-05-05 15:52:09 CEST.

Package	ERROR	NOTE	OK
aplot			13
aplotExtra			13
badger	1		12
dlstats			13
emojifont			13
enrichit			13
fanyi			13
ggbreak			13
ggfun			13
ggimage			13
gglycan			13
ggplotify			13
ggtangle	1		12
gson			13
hexSticker			13
ivolcano	1		12
meme			13
mirrorselect			13
plotbb			13
rvcheck			13
scatterpie			13
scholar			13
seqmagick			13
shadowtext			13
shinyTempSignal	1	12
TDbook		2	11
tidydr			13
tidytree			13
wget			13
wikiprofiler			13
yulab.utils			13

Package aplot

Current CRAN status: OK: 13

Package aplotExtra

Current CRAN status: OK: 13

Package badger

Current CRAN status: ERROR: 1, OK: 12

Version: 0.2.5
Check: tests
Result: ERROR Running 'testthat.R' [34s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(badger) > > test_check("badger") Saving _problems/test-badges-25.R [ FAIL 1 | WARN 1 | SKIP 0 | PASS 32 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-badges.R:22:5'): Bioconductor badges work as expected ────────── Error in `file(con, "r")`: cannot open the connection to 'https://bioconductor.org/packages/3.22/bioc/html/BiocGenerics.html' Backtrace: ▆ 1. ├─testthat::expect_match(...) at test-badges.R:22:5 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─badger::badge_bioc_release("BiocGenerics", color = "green") 5. └─rvcheck::check_bioc(pkg) 6. └─rvcheck:::check_release("BioCsoft", pkg, msg) 7. └─base::readLines(url) 8. └─base::file(con, "r") [ FAIL 1 | WARN 1 | SKIP 0 | PASS 32 ] Error: ! Test failures. Execution halted Flavor: r-oldrel-windows-x86_64

Package dlstats

Current CRAN status: OK: 13

Package emojifont

Current CRAN status: OK: 13

Package enrichit

Current CRAN status: OK: 13

Package fanyi

Current CRAN status: OK: 13

Package ggbreak

Current CRAN status: OK: 13

Package ggfun

Current CRAN status: OK: 13

Package ggimage

Current CRAN status: OK: 13

Package gglycan

Current CRAN status: OK: 13

Package ggplotify

Current CRAN status: OK: 13

Package ggtangle

Current CRAN status: ERROR: 1, OK: 12

Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘ggtangle.qmd’ using html <1b>[31m processing file: ggtangle.qmd <1b>[39m<1b>[31mError in `loadNamespace()`: ! there is no package called 'ggtree' Backtrace: ▆ 1. ├─ggplot2::geom_label(...) 2. │ <1b>[39m<1b>[31m└─ggplot2::layer(...) 3. │ └─ggplot2::fortify(data) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) Quitting from ggtangle.qmd:69-77 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'ggtree' --- Backtrace: ▆ 1. ├─ggplot2::geom_label(...) 2. │ └─ggplot2::layer(...) 3. │ └─ggplot2::fortify(data) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted <1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m Error: processing vignette 'ggtangle.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: ggtangle.qmd <1b>[31mError in `loadNamespace()`:<1b>[39m ! there is no package called 'ggtree' Backtrace: ▆ 1. ├─ggplot2::geom_label(...) 2. │ <1b>[31m└─ggplot2::layer(...)<1b>[39m 3. │ └─ggplot2::fortify(data) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) Quitting from ggtangle.qmd:69-77 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'ggtree' --- Backtrace: ▆ 1. ├─ggplot2::geom_label(...) 2. │ └─ggplot2::layer(...) 3. │ └─ggplot2::fortify(data) 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Execution halted <1b>[33mWARN: Error encountered when rendering files<1b>[39m Caused by error in `processx::run()`: ! System command 'quarto' failed --- failed re-building ‘ggtangle.qmd’ SUMMARY: processing the following file failed: ‘ggtangle.qmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Package gson

Current CRAN status: OK: 13

Package hexSticker

Current CRAN status: OK: 13

Package ivolcano

Current CRAN status: ERROR: 1, OK: 12

Version: 0.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘ivolcano.qmd’ using html <1b>[31m processing file: ivolcano.qmd <1b>[39m<1b>[31mError in `library()`: ! there is no package called 'clusterProfiler' Backtrace: ▆ 1. └─base::library(clusterProfiler)<1b>[39m<1b>[31m <1b>[39m<1b>[31m Quitting from ivolcano.qmd:277-324 [pathway-volcano-linkage] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'clusterProfiler' --- Backtrace: ▆ 1. └─base::library(clusterProfiler) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[39m<1b>[31mExecution halted <1b>[39m<1b>[33mWARN: Error encountered when rendering files<1b>[39m Error: processing vignette 'ivolcano.qmd' failed with diagnostics: ! Error running quarto CLI from R. Caused by error in `quarto_render()`: ✖ Error returned by quarto CLI. ----------------------------- processing file: ivolcano.qmd <1b>[31mError in `library()`:<1b>[39m ! there is no package called 'clusterProfiler' Backtrace: ▆ 1. └─base::library(clusterProfiler) Quitting from ivolcano.qmd:277-324 [pathway-volcano-linkage] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'clusterProfiler' --- Backtrace: ▆ 1. └─base::library(clusterProfiler) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <1b>[31mExecution halted<1b>[39m <1b>[33mWARN: Error encountered when rendering files<1b>[39m Caused by error in `processx::run()`: ! System command 'quarto' failed --- failed re-building ‘ivolcano.qmd’ SUMMARY: processing the following file failed: ‘ivolcano.qmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Package meme

Current CRAN status: OK: 13

Package mirrorselect

Current CRAN status: OK: 13

Package plotbb

Current CRAN status: OK: 13

Package rvcheck

Current CRAN status: OK: 13

Package scatterpie

Current CRAN status: OK: 13

Package scholar

Current CRAN status: OK: 13

Package seqmagick

Current CRAN status: OK: 13

Package shadowtext

Current CRAN status: OK: 13

Package shinyTempSignal

Current CRAN status: ERROR: 1, NOTE: 12

Version: 0.0.8
Check: DESCRIPTION meta-information
Result: NOTE Missing dependency on R >= 4.1.0 because package code uses the pipe |> or function shorthand \(...) syntax added in R 4.1.0. File(s) using such syntax: ‘app_server.R’ ‘function.R’ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 0.0.8
Check: package dependencies
Result: ERROR Packages required but not available: 'ggtree', 'treeio' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-release-linux-x86_64

Package TDbook

Current CRAN status: NOTE: 2, OK: 11

Version: 0.0.6
Check: CRAN incoming feasibility
Result: NOTE Maintainer: ‘Guangchuang Yu <guangchuangyu@gmail.com>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Package tidydr

Current CRAN status: OK: 13

Package tidytree

Current CRAN status: OK: 13

Package wget

Current CRAN status: OK: 13

Package wikiprofiler

Current CRAN status: OK: 13

Package yulab.utils

Current CRAN status: OK: 13