CRAN Package Check Results for Package ctsem

Last updated on 2025-12-26 11:52:05 CET.

Flavor	Version	T_install	T_check	T_total	Status	Flags
r-devel-linux-x86_64-debian-clang	3.10.4	1188.55	420.41	1608.96	OK
r-devel-linux-x86_64-debian-gcc	3.10.4	1079.72	349.50	1429.22	OK
r-devel-linux-x86_64-fedora-clang	3.10.4	1440.00	661.77	2101.77	OK
r-devel-linux-x86_64-fedora-gcc	3.10.4	2460.00	717.23	3177.23	OK
r-devel-windows-x86_64	3.10.4	1027.00	445.00	1472.00	ERROR	--no-vignettes
r-patched-linux-x86_64	3.10.4	1211.93	442.28	1654.21	OK
r-release-linux-x86_64	3.10.4	1247.27	436.90	1684.17	OK
r-release-macos-arm64	3.10.4				OK
r-release-windows-x86_64	3.10.4	996.00	425.00	1421.00	OK	--no-vignettes
r-oldrel-macos-arm64	3.10.4				NOTE
r-oldrel-windows-x86_64	3.10.4	1113.00	487.00	1600.00	NOTE	--no-vignettes

Additional issues

donttest M1mac

Check Details

Version: 3.10.4
Flags: --no-vignettes
Check: examples
Result: ERROR Running examples in 'ctsem-Ex.R' failed The error most likely occurred in: > ### Name: ctACF > ### Title: Continuous Time Autocorrelation Function (ctACF) > ### Aliases: ctACF > > ### ** Examples > > data.table::setDTthreads(1) #ignore this line > # Example usage: > head(ctstantestdat) id time Y1 Y2 TD1 TI1 TI2 TI3 4 1 0.000000 8.628419 13.55213 0 -0.05380504 -1.366299 -0.2074973 5 1 0.123705 NA 11.34075 NA -0.05380504 -1.366299 -0.2074973 6 1 0.594186 7.500058 12.33738 0 -0.05380504 -1.366299 -0.2074973 7 1 0.888842 6.834832 12.63265 1 -0.05380504 -1.366299 -0.2074973 8 1 1.186905 7.010044 11.90834 0 -0.05380504 -1.366299 -0.2074973 9 1 1.624510 6.791367 10.21116 0 -0.05380504 -1.366299 -0.2074973 > ctACF(ctstantestdat,varnames=c('Y1'),idcol='id',timecol='time',nboot=5) Loading required namespace: collapse Error in `[.data.table`(dat, , `:=`(.timediff, c(NA, diff(get(timecol)))), : attempt access index 8/8 in VECTOR_ELT Calls: ctACF -> quantile -> [ -> [.data.table Execution halted Flavor: r-devel-windows-x86_64

Version: 3.10.4
Flags: --no-vignettes
Check: tests
Result: ERROR Running 'testthat.R' [91s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(ctsem) Loading required package: Rcpp ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions > pdf(NULL) > test_check("ctsem") Saving _problems/test-intervalise-12.R Saving _problems/test-reshaping-30.R [,1] [,2] [1,] "0" "0" [2,] "0" "diff" [,1] [1,] "0" [,1] [1,] "0" [2,] "cint" ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=23108 on localhost:32309 at 01:15:19.839 starting worker pid=42640 on localhost:32309 at 01:15:20.112 Loading required package: data.table Loading required package: data.table Attaching package: 'data.table' The following object is masked from 'package:base': %notin% Attaching package: 'data.table' The following object is masked from 'package:base': %notin% ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions ctsem also changes in time, for manual run ctDocs(), for blog see https://cdriver.netlify.app/, for citation info run citation('ctsem'), for original OpenMx functionality install.packages('ctsemOMX'), and for discussion https://github.com/cdriveraus/ctsem/discussions starting worker pid=52704 on localhost:33785 at 01:15:39.515 starting worker pid=65808 on localhost:33785 at 01:15:39.879 Loading required package: data.table Loading required package: data.table Attaching package: 'data.table' Attaching package: 'data.table' The following object is masked from 'package:base': %notin% The following object is masked from 'package:base': %notin% starting worker pid=16308 on localhost:11418 at 01:15:43.560 starting worker pid=33432 on localhost:11418 at 01:15:43.802 SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 1). Chain 1: Chain 1: Gradient evaluation took 0.005846 seconds Chain 1: 1000 transitions using 10 leapfrog steps per transition would take 58.46 seconds. Chain 1: Adjust your expectations accordingly! Chain 1: Chain 1: Chain 1: Iteration: 1 / 300 [ 0%] (Warmup) SAMPLING FOR MODEL 'ctsm' NOW (CHAIN 2). Chain 2: Chain 2: Gradient evaluation took 0.0076 seconds Chain 2: 1000 transitions using 10 leapfrog steps per transition would take 76 seconds. Chain 2: Adjust your expectations accordingly! Chain 2: Chain 2: Chain 2: Iteration: 1 / 300 [ 0%] (Warmup) Chain 2: Iteration: 20 / 300 [ 6%] (Warmup) Chain 1: Iteration: 20 / 300 [ 6%] (Warmup) Chain 2: Iteration: 40 / 300 [ 13%] (Warmup) Chain 1: Iteration: 40 / 300 [ 13%] (Warmup) Chain 2: Iteration: 60 / 300 [ 20%] (Warmup) Chain 1: Iteration: 60 / 300 [ 20%] (Warmup) Chain 2: Iteration: 80 / 300 [ 26%] (Warmup) Chain 1: Iteration: 80 / 300 [ 26%] (Warmup) Chain 2: Iteration: 100 / 300 [ 33%] (Warmup) Chain 1: Iteration: 100 / 300 [ 33%] (Warmup) Chain 2: Iteration: 120 / 300 [ 40%] (Warmup) Chain 1: Iteration: 120 / 300 [ 40%] (Warmup) Chain 1: Iteration: 140 / 300 [ 46%] (Warmup) Chain 2: Iteration: 140 / 300 [ 46%] (Warmup) Chain 1: Iteration: 151 / 300 [ 50%] (Sampling) Chain 2: Iteration: 151 / 300 [ 50%] (Sampling) Chain 1: Iteration: 170 / 300 [ 56%] (Sampling) Chain 2: Iteration: 170 / 300 [ 56%] (Sampling) Chain 1: Iteration: 190 / 300 [ 63%] (Sampling) Chain 2: Iteration: 190 / 300 [ 63%] (Sampling) Chain 1: Iteration: 210 / 300 [ 70%] (Sampling) Chain 2: Iteration: 210 / 300 [ 70%] (Sampling) Chain 2: Iteration: 230 / 300 [ 76%] (Sampling) Chain 1: Iteration: 230 / 300 [ 76%] (Sampling) Chain 2: Iteration: 250 / 300 [ 83%] (Sampling) Chain 1: Iteration: 250 / 300 [ 83%] (Sampling) Chain 2: Iteration: 270 / 300 [ 90%] (Sampling) Chain 1: Iteration: 270 / 300 [ 90%] (Sampling) Chain 2: Iteration: 290 / 300 [ 96%] (Sampling) Chain 1: Iteration: 290 / 300 [ 96%] (Sampling) Chain 2: Iteration: 300 / 300 [100%] (Sampling) Chain 2: Chain 2: Elapsed Time: 19.139 seconds (Warm-up) Chain 2: 10.512 seconds (Sampling) Chain 2: 29.651 seconds (Total) Chain 2: Chain 1: Iteration: 300 / 300 [100%] (Sampling) Chain 1: Chain 1: Elapsed Time: 19.344 seconds (Warm-up) Chain 1: 10.955 seconds (Sampling) Chain 1: 30.299 seconds (Total) Chain 1: [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] ══ Skipped tests (16) ══════════════════════════════════════════════════════════ • empty test (16): , , , , , , , , , , , , , , , ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-intervalise.R:10:3'): intervals ──────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-intervalise.R:10:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) ── Error ('test-reshaping.R:29:3'): reshaping1 ───────────────────────────────── Error in ``[.data.table`(data_long, , `:=`(discrete.time.point = 1:.N), by = id)`: attempt access index 8/8 in VECTOR_ELT Backtrace: ▆ 1. └─ctsem::ctLongToWide(...) at test-reshaping.R:29:3 2. ├─data_long[, `:=`(discrete.time.point = 1:.N), by = id] 3. └─data.table:::`[.data.table`(...) [ FAIL 2 | WARN 0 | SKIP 16 | PASS 6 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64

Version: 3.10.4
Check: installed package size
Result: NOTE installed size is 201.7Mb sub-directories of 1Mb or more: R 2.0Mb data 1.7Mb libs 196.6Mb Flavor: r-oldrel-macos-arm64

Version: 3.10.4
Check: for GNU extensions in Makefiles
Result: NOTE GNU make is a SystemRequirements. Flavor: r-oldrel-macos-arm64

Version: 3.10.4
Flags: --no-vignettes
Check: installed package size
Result: NOTE installed size is 11.6Mb sub-directories of 1Mb or more: R 1.2Mb data 1.7Mb libs 7.3Mb Flavor: r-oldrel-windows-x86_64