Last updated on 2025-12-07 09:50:12 CET.
| Package | ERROR | WARN | NOTE | OK |
|---|---|---|---|---|
| canvasXpress | 1 | 12 | ||
| canvasXpress.data | 13 | |||
| DGEobj | 1 | 12 | ||
| DGEobj.utils | 1 | 12 | ||
| periscope | 1 | 12 |
Current CRAN status: ERROR: 1, OK: 12
Version: 1.58.7
Check: package dependencies
Result: ERROR
Package required but not available: ‘htmlwidgets’
Packages suggested but not available for checking:
'DT', 'knitr', 'rmarkdown', 'survminer'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 13
Current CRAN status: WARN: 1, OK: 12
Version: 1.1.2
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking: 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1.2
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: ERROR: 1, NOTE: 12
Version: 1.0.6
Check: Rd files
Result: NOTE
checkRd: (-1) runContrasts.Rd:79: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:80: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:81: Lost braces in \itemize; meant \describe ?
checkRd: (-1) runContrasts.Rd:82: Lost braces in \itemize; meant \describe ?
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.6
Check: package dependencies
Result: WARN
Cannot process vignettes
Packages suggested but not available for checking:
'canvasXpress', 'knitr', 'rmarkdown'
VignetteBuilder package required for checking but not installed: ‘knitr’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [51s/68s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(DGEobj.utils)
>
> test_check("DGEobj.utils")
Loading required package: DGEobj
Loading required package: statmod
Loading required package: RNASeqPower
Loading required package: edgeR
Loading required package: limma
Saving _problems/test_runEdgeRNorm-48.R
Saving _problems/test_runEdgeRNorm-60.R
Saving _problems/test_runEdgeRNorm-70.R
Saving _problems/test_runPower-27.R
Saving _problems/test_runPower-28.R
Saving _problems/test_runPower-29.R
Saving _problems/test_runPower-33.R
Saving _problems/test_runPower-34.R
Saving _problems/test_runPower-35.R
Number of significant surrogate variables is: 11
Iteration (out of 5 ):1 2 3 4 5 Number of significant surrogate variables is: 10
Iteration (out of 5 ):1 2 3 4 5 Number of significant surrogate variables is: 43
Iteration (out of 5 ):[ FAIL 9 | WARN 1 | SKIP 1 | PASS 322 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• On CRAN (1): 'test_runVoom.R:5:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_runEdgeRNorm.R:48:5'): runEdgeRNorm: runEdgeRNorm() ──────────
Expected `runEdgeRNorm_two_test[[2]]` to be an S3 object.
Actual OO type: none.
── Failure ('test_runEdgeRNorm.R:60:5'): runEdgeRNorm: runEdgeRNorm() ──────────
Expected `runEdgeRNorm_two_test[[2]]` to be an S3 object.
Actual OO type: none.
── Failure ('test_runEdgeRNorm.R:70:5'): runEdgeRNorm: runEdgeRNorm() ──────────
Expected `runEdgeRNorm_two_test[[2]]` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:27:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$ROC` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:28:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$NvP` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:29:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$PowerData` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:33:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$ROC` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:34:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$NvP` to be an S3 object.
Actual OO type: none.
── Failure ('test_runPower.R:35:5'): runPower.R: runPower() ────────────────────
Expected `power_plot$PowerData` to be an S3 object.
Actual OO type: none.
[ FAIL 9 | WARN 1 | SKIP 1 | PASS 322 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.6
Check: package vignettes
Result: NOTE
Package has ‘vignettes’ subdirectory but apparently no vignettes.
Perhaps the ‘VignetteBuilder’ information is missing from the
DESCRIPTION file?
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.6
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘zFPKM’
Flavor: r-oldrel-macos-arm64
Current CRAN status: ERROR: 1, OK: 12
Version: 1.0.4
Check: package dependencies
Result: ERROR
Packages required but not available: 'DT', 'yaml'
Packages suggested but not available for checking:
'knitr', 'rmarkdown', 'canvasXpress', 'colourpicker'
VignetteBuilder package required for checking but not installed: ‘knitr’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-gcc