Generating Multi-Omics Datasets for Testing and Benchmarking
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Documentation for package ‘SUMO’ version 1.2.0
Help Pages
| SUMO-package | SUMO: Simulation Utilities for Multi-Omics Data |
| compute_means_vars | Compute Summary Statistics for a List of Datasets |
| demo_multiomics_analysis | Demonstration of SUMO Utility in Multi-Omics Analysis using MOFA2 |
| divide_features_one | Dividing features to create vectors with signal in the first omic for single data |
| divide_features_two | Dividing features to create vectors with signal in the second omic for single data |
| divide_samples | Global Variable |
| divide_vector | #' Global Variable #' #' A global variable used in multiple functions. #' #' |
| feature_selection_one | Dividing features to create vectors with signal in the first omic |
| feature_selection_two | Dividing features to create vectors with signal in the second omic |
| plot_factor | Visualization of factor scores (ground truth) |
| plot_simData | Visualizing the simulated data using heatmap or 3D surface plot |
| plot_weights | Visualizing the raw loading/weights of the features |
| simulateMultiOmics | Simulation of omics with predefined single or multiple latent factors in multi-omics |
| simulate_twoOmicsData | Simulation of omics with predefined single or multiple latent factors in multi-omics |
| SUMO | SUMO: Simulation Utilities for Multi-Omics Data |