* using log directory 'd:/Rcompile/CRANpkg/local/4.7/siera.Rcheck' * using R Under development (unstable) (2026-05-01 r89993 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * current time: 2026-05-03 18:36:51 UTC * checking for file 'siera/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'siera' version '0.5.5' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'siera' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s] OK * checking whether the package can be loaded with stated dependencies ... [0s] OK * checking whether the package can be unloaded cleanly ... [0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s] OK * checking whether the namespace can be unloaded cleanly ... [0s] OK * checking loading without being on the library search path ... [0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s] OK * checking Rd files ... [0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... [3s] OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... [40s] OK Running 'testthat.R' [40s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [12s] ERROR Error(s) in re-building vignettes: --- re-building 'ARD_script_structure.Rmd' using rmarkdown --- finished re-building 'ARD_script_structure.Rmd' --- re-building 'Getting_started.Rmd' using rmarkdown Quitting from Getting_started.Rmd:78-88 [run ARD_xxx] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `as.data.frame.integer()`: ! row names contain missing values --- Backtrace: ▆ 1. ├─cards::ard_categorical(...) 2. └─cards:::ard_categorical.data.frame(...) 3. ├─dplyr::mutate(ard_tabulate(data = data, ...), context = "categorical") 4. ├─cards::ard_tabulate(data = data, ...) 5. └─cards:::ard_tabulate.data.frame(data = data, ...) 6. └─cards:::.calculate_tabulation_statistics(...) 7. └─cards:::.process_denominator(...) 8. ├─rlang::rep_named(...) 9. │ └─rlang::set_names(rep_len(x, length(names)), names) 10. ├─tidyr::drop_na(...) 11. └─cards:::.table_as_df(...) 12. ├─dplyr::as_tibble(...) 13. └─tibble:::as_tibble.table(...) 14. ├─base::as.data.frame(x, stringsAsFactors = FALSE) 15. └─base::as.data.frame.table(x, stringsAsFactors = FALSE) 16. ├─base::eval(ex) 17. │ └─base::eval(ex) 18. └─base::data.frame(...) 19. ├─base::as.data.frame(x[[i]], optional = TRUE) 20. └─base::as.data.frame.integer(x[[i]], optional = TRUE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Getting_started.Rmd' failed with diagnostics: row names contain missing values --- failed re-building 'Getting_started.Rmd' --- re-building 'apply-ARD.Rmd' using rmarkdown --- finished re-building 'apply-ARD.Rmd' --- re-building 'using-cards.Rmd' using rmarkdown --- finished re-building 'using-cards.Rmd' SUMMARY: processing the following file failed: 'Getting_started.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [20s] OK * checking HTML version of manual ... [3s] OK * DONE Status: 1 ERROR