Estimating Infection Rates from Serological Data
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘serocalculator’ version 1.4.0
Help Pages
| analyze_sims | Analyze simulation results |
| as_noise_params | Load noise parameters |
| as_pop_data | Load a cross-sectional antibody survey data set |
| as_sr_params | Load longitudinal seroresponse parameters |
| autoplot.curve_params | Graph antibody decay curves by antigen isotype |
| autoplot.pop_data | Plot distribution of antibodies |
| autoplot.seroincidence | Plot the log-likelihood curve for the incidence rate estimate |
| autoplot.seroincidence.by | Plot 'seroincidence.by' log-likelihoods |
| autoplot.sim_results | Plot simulation results 'autoplot()' method for 'sim_results' objects |
| autoplot.summary.seroincidence.by | Plot method for 'summary.seroincidence.by' objects |
| check_pop_data | Check the formatting of a cross-sectional antibody survey dataset. |
| est_seroincidence | Find the maximum likelihood estimate of the incidence rate parameter |
| est_seroincidence_by | Estimate Seroincidence |
| example_noise_params_pk | Small example of noise parameters for typhoid |
| example_noise_params_sees | Small example of noise parameters for typhoid |
| get_biomarker_levels | Extract biomarker levels |
| get_biomarker_names_var | Get biomarker variable name |
| get_values | Get antibody measurement values |
| get_values_var | Extract antibody measurement values |
| graph.curve.params | Graph estimated antibody decay curves |
| graph_loglik | Graph log-likelihood of data |
| load_noise_params | Load noise parameters |
| load_pop_data | Load a cross-sectional antibody survey data set |
| load_sr_params | Load longitudinal seroresponse parameter samples |
| log_likelihood | Calculate log-likelihood |
| sees_pop_data_100 | Small example cross-sectional data set |
| sees_pop_data_pk_100 | Small example cross-sectional data set |
| sees_typhoid_ests_strat | Example '"seroincidence.by"' object |
| serocalculator_example | Get path to an example file |
| sim_pop_data | Simulate a cross-sectional serosurvey with noise |
| sim_pop_data_multi | Simulate multiple data sets |
| strata | Extract 'Strata' metadata from an object |
| summary.seroincidence | Summarizing fitted seroincidence models |
| summary.seroincidence.by | Summary Method for '"seroincidence.by"' Objects |
| typhoid_curves_nostrat_100 | Small example of antibody response curve parameters for typhoid |