%BC%                    Binary matrix times character vector
available_draw          Available Draw Functions
available_supervised    Available Algorithms
available_themes        Print available 'rtemis' themes
calibrate               Calibrate 'Classification' &
                        'ClassificationRes' Models
check_data              Check Data
choose_theme            Select an rtemis theme
class_imbalance         Class Imbalance
classification_metrics
                        Classification Metrics
clean_colnames          Clean column names
clean_names             Clean names
cluster                 Perform Clustering
col2grayscale           Color to Grayscale
color_adjust            Adjust HSV Color
ddSci                   Format Numbers for Printing
ddb_collect             Collect a lazy-read duckdb table
ddb_data                Read CSV using DuckDB
decomp                  Perform Data Decomposition
describe                Describe rtemis object
describe.factor         Describe factor
df_movecolumn           Move data frame column
df_nunique_perfeat      Unique values per feature
draw_3Dscatter          Interactive 3D Scatter Plots
draw_bar                Interactive Barplots
draw_box                Interactive Boxplots & Violin plots
draw_calibration        Draw calibration plot
draw_confusion          Plot confusion matrix
draw_dist               Draw Distributions using Histograms and Density
                        Plots
draw_fit                True vs. Predicted Plot
draw_graphD3            Plot graph using 'networkD3'
draw_graphjs            Plot network using 'threejs::graphjs'
draw_heatmap            Interactive Heatmaps
draw_leaflet            Plot interactive choropleth map using 'leaflet'
draw_pie                Interactive Pie Chart
draw_protein            Plot an amino acid sequence with annotations
draw_pvals              Barplot p-values using draw_bar
draw_roc                Draw ROC curve
draw_scatter            Interactive Scatter Plots
draw_spectrogram        Interactive Spectrogram
draw_survfit            Draw a survfit object
draw_table              Simple HTML table
draw_ts                 Interactive Timeseries Plots
draw_varimp             Interactive Variable Importance Plot
draw_volcano            Volcano Plot
draw_xt                 Plot timeseries data
dt_describe             Describe data.table
dt_inspect_types        Inspect column types
dt_keybin_reshape       Long to wide key-value reshaping
dt_merge                Merge data.tables
dt_names_by_attr        List column names by attribute
dt_nunique_perfeat      Number of unique values per feature
dt_pctmatch             Get N and percent match of values between two
                        columns of two data.tables
dt_pctmissing           Get percent of missing values from every column
dt_set_autotypes        Set column types automatically
dt_set_clean_all        Clean column names and factor levels
                        _*in-place*_
dt_set_cleanfactorlevels
                        Clean factor levels of data.table _*in-place*_
dt_set_logical2factor   Convert data.table logical columns to factors
dt_set_one_hot          Convert data.table's factor to one-hot encoding
                        _*in-place*_
exc                     Exclude columns by character or numeric vector.
feature_matrix          Convert tabular data to feature matrix
feature_names           Get feature names
features                Get features from tabular data
get_factor_names        Get factor names
get_mode                Get the mode of a factor or integer
get_palette             Get Color Palette
getnames                Get names by string matching or class
getnamesandtypes        Get data.frame names and types
inc                     Select (include) columns by character or
                        numeric vector.
index_col_by_attr       Index columns by attribute name & value
init_project_dir        Initialize Project Directory
inspect                 Inspect rtemis object
inspect_type            Inspect character and factor vector
is_constant             Check if vector is constant
labelify                Format text for label printing
massGLM                 Mass-univariate GLM Analysis
matchcases              Match cases by covariates
mgetnames               Get names by string matching multiple patterns
names_by_class          List column names by class
one_hot2factor          Convert one-hot encoded matrix to factor
outcome                 Get the outcome as a vector
outcome_name            Get the name of the last column
plot.MassGLM            Plot MassGLM using volcano plot
plot_manhattan          Manhattan plot
plot_roc                Plot ROC curve
plot_true_pred          Plot True vs. Predicted Values
plot_varimp             Plot Variable Importance
preprocess              Preprocess Data
preprocessed            Get preprocessed data from 'Preprocessor'.
present                 Present rtemis object
present.list            Present list of Supervised or SupervisedRes
                        objects
previewcolor            Preview color
read                    Read tabular data from a variety of formats
read_config             Read 'SuperConfig' from TOML file
regression_metrics      Regression Metrics
resample                Resample data
rnormmat                Random Normal Matrix
rtemis-package          'rtemis': Advanced Machine Learning and
                        Visualization
rtemis_colors           rtemis Color System
rtversion               Get rtemis version and system info
runifmat                Random Uniform Matrix
set_outcome             Move outcome to last column
setdiffsym              Symmetric Set Difference
setup_CART              Setup CART Hyperparameters
setup_CMeans            Setup CMeansConfig
setup_DBSCAN            Setup DBSCANConfig
setup_ExecutionConfig   Setup Execution Configuration
setup_GAM               Setup GAM Hyperparameters
setup_GLM               Setup GLM Hyperparameters
setup_GLMNET            Setup GLMNET Hyperparameters
setup_GridSearch        Setup Grid Search Config
setup_HardCL            Setup HardCLConfig
setup_ICA               setup_ICA
setup_Isomap            Setup Isomap config.
setup_Isotonic          Setup Isotonic Hyperparameters
setup_KMeans            Setup KMeansConfig
setup_LightCART         Setup LightCART Hyperparameters
setup_LightGBM          Setup LightGBM Hyperparameters
setup_LightRF           Setup LightRF Hyperparameters
setup_LightRuleFit      Setup LightRuleFit Hyperparameters
setup_LinearSVM         Setup LinearSVM Hyperparameters
setup_NMF               Setup NMF config.
setup_NeuralGas         Setup NeuralGasConfig
setup_PCA               Setup PCA config.
setup_Preprocessor      Setup Preprocessor
setup_RadialSVM         Setup RadialSVM Hyperparameters
setup_Ranger            Setup Ranger Hyperparameters
setup_Resampler         Setup Resampler
setup_SuperConfig       Setup SuperConfig
setup_TabNet            Setup TabNet Hyperparameters
setup_UMAP              Setup UMAP config.
setup_tSNE              Setup tSNE config.
size                    Size of object
table_column_attr       Tabulate column attributes
theme_black             Themes for draw_* functions
train                   Train Supervised Learning Models
uniprot_get             Get protein sequence from UniProt
write_toml              Write to TOML file
xt_example              Example longitudinal dataset
xtdescribe              Describe longitudinal dataset
