Analysis of Chlorophyll a Fluorescence Transient Parameters

---

Documentation for package ‘fluorojip’ version 0.1.1

• DESCRIPTION file
• User guides, package vignettes and other documentation

Help Pages

calc_fluorojip	Compute chlorophyll a fluorescence OJIP / JIP-test parameters
calc_fluorojip_file	Read a summary table and compute FluorOJIP parameters
calc_fluorojip_fluorpen	Calculate FluorOJIP parameters from a FluorPen workbook
calc_fluorojip_handypea	Calculate FluorOJIP parameters from a supported exported table
example_fluorojip	Example OJIP summary data
fluorojip_example_biolyzer_file	Get the bundled Biolyzer validation workbook path
fluorpen_to_ojip	Convert FluorPen traces to an OJIP summary table
handypea_to_ojip	Convert a supported CSV trace export to an OJIP summary table
normalized_jiptable	Build a normalized JIP parameter table
plot_3d_fluorojip	Plot a 3D scatter plot of OJIP parameters
plot_heatmap_fluorojip	Plot a heatmap of OJIP parameters
plot_param_3d	Plot a 3D scatter plot of OJIP parameters
plot_param_heatmap	Plot a heatmap of OJIP parameters
plot_param_surface3d	Plot a 3D scatter plot of OJIP parameters
read_fluorpen_xlsx	Read a FluorPen Excel export
read_handypea_csv	Read a supported Biolyzer-exported CSV trace table
run_fluorojip_app	Run the fluorojip Shiny application
write_normalized_jiptable	Write a normalized JIP parameter table