| diagFDR::diann | diagFDR: DIA-NN diagnostics from report.parquet | HTML | source | R code | |
| diagFDR::maxquant | diagFDR: MaxQuant diagnostics from msms.txt | HTML | source | R code | |
| diagFDR::mokapot | diagFDR: mokapot diagnostics (competed winners) | HTML | source | R code | |
| diagFDR::mzid | diagFDR: generic PSM diagnostics from mzIdentML (.mzid) | HTML | source | R code | |
| diagFDR::spectronaut | diagFDR: generic elution groups diagnostics from Spectronaut (tsv report) | HTML | source | R code |