A Unified Framework for Machine Learning Ensembles in Survival Analysis

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Documentation for package ‘SuperSurv’ version 0.1.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package README

Help Pages

estimate_marginal_rmst	Estimate Causal Restricted Mean Survival Time (RMST)
eval_brier	IPCW Brier Score and Integrated Brier Score (IBS)
eval_cindex	Calculate Concordance Index (Harrell's or Uno's)
eval_summary	Evaluate SuperSurv predictions on test data
eval_timeROC	Time-Dependent AUC and Integrated AUC
explain_kernel	Explain Predictions with Global SHAP (Kernel SHAP)
explain_survex	Create a Time-Dependent Survex Explainer
list_wrappers	List Available Wrappers and Screeners in SuperSurv
metabric	METABRIC Breast Cancer Dataset
plot_beeswarm	Beeswarm Summary Plot for SuperSurv SHAP
plot_benchmark	Plot Longitudinal Benchmark Metrics
plot_calibration	Plot Survival Calibration Curve
plot_dependence	Plot SHAP Dependence for SuperSurv
plot_global_importance	Plot Global Feature Importance for SuperSurv
plot_marginal_rmst_curve	Plot Causal RMST Difference Over Time
plot_patient_waterfall	Waterfall Plot for an Individual Patient
plot_predict	Plot Predicted Survival Curves
plot_rmst_vs_obs	Plot Predicted RMST vs. Observed Survival Times
plot_survival_heatmap	Survival Probability Heatmap
predict.SuperSurv	Predict method for SuperSurv fits
predict.surv.aorsf	Prediction function for AORSF
predict.surv.bart	Prediction function for BART
predict.surv.coxboost	Prediction function for CoxBoost wrapper
predict.surv.coxph	Prediction function for Cox regression wrapper
predict.surv.gam	Prediction function for GAM wrapper
predict.surv.gbm	Prediction function for GBM wrapper
predict.surv.glmnet	Prediction function for GLMNET wrapper
predict.surv.km	Predict Method for Kaplan-Meier Wrapper
predict.surv.parametric	Prediction function for Universal Parametric Wrapper
predict.surv.ranger	Prediction function for Ranger wrapper
predict.surv.rfsrc	Prediction function for survival random forest (RFSRC)
predict.surv.ridge	Prediction function for Ridge wrapper
predict.surv.rpart	Prediction function for rpart wrapper
predict.surv.svm	Prediction function for SVM wrapper
predict.surv.xgboost	Prediction function for XGBoost wrapper
screen.all	Keep All Variables Screener
screen.elasticnet	Elastic Net Screening Algorithm
screen.glmnet	GLMNET (Lasso) Screening
screen.marg	Marginal Cox Regression Screening
screen.rfsrc	Random Survival Forest Screening Algorithm
screen.var	High Variance Screening Algorithm (Unsupervised)
SuperSurv	Super Learner for conditional survival functions
surv.aorsf	Wrapper for AORSF (Oblique Random Survival Forest)
surv.bart	Wrapper for BART (Bayesian Additive Regression Trees)
surv.coxboost	Wrapper function for Component-Wise Boosting (CoxBoost)
surv.coxph	Wrapper for standard Cox Proportional Hazards
surv.exponential	Parametric Survival Prediction Wrapper (Exponential)
surv.gam	Wrapper for Generalized Additive Cox Regression (GAM)
surv.gbm	Wrapper function for Gradient Boosting (GBM) prediction algorithm
surv.glmnet	Wrapper function for Penalized Cox Regression (GLMNET)
surv.km	Kaplan-Meier Prediction Algorithm
surv.loglogistic	Parametric Survival Prediction Wrapper (Log-Logistic)
surv.lognormal	Parametric Survival Prediction Wrapper (Log-Normal)
surv.parametric	Universal Parametric Survival Wrapper
surv.ranger	Wrapper function for Ranger Random Survival Forest
surv.rfsrc	Wrapper function for Random Survival Forests (RFSRC)
surv.ridge	Wrapper for Ridge Regression (Penalized Cox)
surv.rpart	Wrapper for Survival Regression Trees (rpart)
surv.svm	Wrapper for Survival Support Vector Machine (survivalsvm)
surv.weibull	Parametric Survival Prediction Wrapper (Weibull)
surv.xgboost	Wrapper for XGBoost (Robust CV-Tuned + Safe Prediction)