Flexible Integration of Single-Cell RNA-Seq Data

---

Documentation for package ‘FIRM’ version 0.1.2

• DESCRIPTION file
• Package README

Help Pages

ExampleData	Example single-cell datasets
FIRM	Flexible Integration of Single-Cell RNA-Seq Data
label_trans	Label transfer via k-NN (hard assignment)
label_trans_prob	Label transfer via k-NN (soft assignment / probabilities)
Local_Struct	Local structure preservation metric
match_score	Match score between query and reference neighbourhoods
Mixing_Metric	k-NN Mixing Metric
prep_data	Data preprocessing for FIRM integration
SelectGene	Select consensus genes across multiple HVG lists
Select_hvg	Combine or select top HVGs from saved prep_data outputs