Biomonitoring and Bioassessment Calculations

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Documentation for package ‘BioMonTools’ version 1.2.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

assign_IndexClass	Assign Index_Class
data_benthos_MBSS	Benthic macroinvertebrate taxa data; MBSS
data_benthos_PacNW	Benthic macroinvertebrate taxa data; Pacific Northwest
data_bio2rarify	rarify example data
data_coral_bcg_metric_dev	Coral taxa data; Florida BCG.
data_coral_bcg_metric_qc	Coral metric value data; Florida BCG.
data_diatom_mmi_dev	Diatom taxa data; Indiana DEM
data_diatom_mmi_qc	Diatom metric value data; Indiana DEM
data_fish_MBSS	Fish data, MBSS
data_metval_scmb_ibi	data_metval_scmb_ibi
data_mmi_dev	Metric data for metric stats for mmi development
data_mmi_dev_small	Metric data for metric stats for mmi development
data_Taxa_MA	Estuary taxa data
MapTaxaObs	Taxa Observation Maps
markExcluded	Mark "exclude" (non-distinct / non-unique / ambiguous) taxa
metric.scores	Score metrics
metric.stats	Calculate metric statistics
metric.stats2	Secondary metric statistics
metric.values	Calculate metric values
metvalgrpxl	Metric values Groups to Excel
qc.checks	QC checks on metric values
qc_taxa	Quality Control Check on User Data Against Master Taxa List
rarify	Rarify (subsample) biological sample to fixed count
TaxaMaster_Ben_BCG_PacNW	TaxaMaster_Ben_BCG_PacNW
taxa_translate	Taxa Translate