Tidying, Analysis, and Fast Visualization of Animal and Plant
Pedigrees
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Documentation for package ‘visPedigree’ version 1.8.1
Help Pages
| as_tidyped | Restore the tidyped class to a manipulated pedigree |
| big_family_size_ped | A large pedigree with big family sizes |
| complex_ped | A complex pedigree |
| deep_ped | A deep pedigree |
| expand_pedmat | Expand a Compact Pedigree Matrix to Full Dimensions |
| half_founder_ped | A pedigree with half founders |
| has_candidates | Check whether a tidyped object contains candidate flags |
| has_inbreeding | Check whether a tidyped object contains inbreeding coefficients |
| inbred_ped | A highly inbred pedigree |
| inbreed | Calculate inbreeding coefficients |
| is_tidyped | Test if an object is a tidyped |
| loop_ped | A pedigree with loops |
| pedancestry | Calculate Ancestry Proportions |
| pedcontrib | Calculate Founder and Ancestor Contributions |
| pedecg | Calculate Equi-Generate Coefficient |
| pedfclass | Summarize Inbreeding Levels |
| pedgenint | Calculate Generation Intervals |
| pedhalflife | Calculate Information-Theoretic Diversity Half-Life |
| pediv | Calculate Genetic Diversity Indicators |
| pedmat | Genetic Relationship Matrices and Inbreeding Coefficients |
| pedmeta | Access pedigree metadata from a tidyped object |
| pedne | Calculate Effective Population Size |
| pedpartial | Calculate Partial Inbreeding |
| pedrel | Calculate Mean Relationship or Coancestry Within Groups |
| pedstats | Pedigree Statistics |
| pedsubpop | Pedigree Subpopulations |
| plot.pedhalflife | Calculate Information-Theoretic Diversity Half-Life |
| plot.tidyped | Plot a tidy pedigree |
| print.pedcontrib | Print Founder and Ancestor Contributions |
| print.pedhalflife | Calculate Information-Theoretic Diversity Half-Life |
| print.pediv | Print Genetic Diversity Summary |
| print.pedstats | Print Pedigree Statistics |
| print.summary.tidyped | Print method for summary.tidyped |
| print.tidyped | Print method for tidyped pedigree |
| query_relationship | Query Relationship Coefficients from a Pedigree Matrix |
| simple_ped | A simple pedigree |
| small_ped | A small pedigree |
| splitped | Split Pedigree into Disconnected Groups |
| summary.tidyped | Summary method for tidyped objects |
| summary_pedmat | Summary Statistics for Pedigree Matrices |
| tidyped | Tidy and prepare a pedigree |
| vismat | Visualize Relationship Matrices |
| visped | Visualize a tidy pedigree |
| [.tidyped | Subset a tidyped object |