Nested Particle Filter for Stochastic SEIR Epidemic Models

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Documentation for package ‘npfseir’ version 0.2.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

npfseir-package	npfseir: Nested Particle Filter for Stochastic SEIR Epidemic Models
cori_rt	Cori-style renewal-equation R_t estimator
npfseir	npfseir: Nested Particle Filter for Stochastic SEIR Epidemic Models
npf_seir	Run the Nested Particle Filter for a stochastic SEIR model
ou_params	Compute exact Ornstein-Uhlenbeck discrete-time transition parameters
plot.npf_seir	Plot method for npf_seir
predict.npf_seir	Posterior predictive forecasts from an npf_seir object
print.npf_seir	Print method for npf_seir
seir_simulate	Simulate a stochastic SEIR epidemic with latent OU transmission
summary.npf_seir	Summary method for npf_seir