Muscle Near-Infrared Spectroscopy Processing and Analysis

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Documentation for package ‘mnirs’ version 0.6.2

Help Pages

artinis_intervals.xlsx 10 Hz Artinis Oxysoft export recorded with Oxymon MKIII
breaks_timespan Breaks for timespan data
by_label Specify interval boundaries by time, label, lap, or sample
by_lap Specify interval boundaries by time, label, lap, or sample
by_sample Specify interval boundaries by time, label, lap, or sample
by_time Specify interval boundaries by time, label, lap, or sample
create_mnirs_data Create an _mnirs_ data frame with metadata
example_mnirs Get path to _mnirs_ example files
extract_intervals Extract intervals from _mnirs_ data
filter_butter Apply a Butterworth digital filter
filter_ma Apply a moving average filter
filter_mnirs Filter a data frame
filter_mnirs.butterworth Filter a data frame
filter_mnirs.moving_average Filter a data frame
filter_mnirs.smooth_spline Filter a data frame
filter_moving_average Apply a moving average filter
format_hmmss Format timespan data as h:mm:ss
moxy_intervals.csv 0.5 Hz Moxy onboard export
moxy_ramp.xlsx 2 Hz PerfPro export of Moxy data
palette_mnirs Custom _mnirs_ colour palette
plot.mnirs Plot _mnirs_ objects
portamon-oxcap.xlsx 10 Hz Artinis Oxysoft export recorded with Portamon
read_mnirs Read _mnirs_ data from file
replace_invalid Replace outliers, invalid, and missing values in _mnirs_ data
replace_missing Replace outliers, invalid, and missing values in _mnirs_ data
replace_mnirs Replace outliers, invalid, and missing values in _mnirs_ data
replace_outliers Replace outliers, invalid, and missing values in _mnirs_ data
resample_mnirs Re-sample an _mnirs_ data frame
rescale_mnirs Re-scale data range
scale_color_mnirs Scales for custom _mnirs_ palette
scale_colour_mnirs Scales for custom _mnirs_ palette
scale_fill_mnirs Scales for custom _mnirs_ palette
shift_mnirs Shift data range
theme_mnirs Custom _mnirs_ ggplot2 theme
train.red_intervals.csv 10 Hz Train.Red App export