.check_platform         Check Platform
.clean_bioplex          Helper function to process bioplex data
.clean_luminex          Helper function to process luminex
                        (Magpix/Intelliflex) data
.convert_dilution_to_mfi
                        Convert known dilution to mfi from fitted
                        standard curve
.convert_mfi_to_dilution
                        Convert mfi to dilution using known standard
                        curve fit.
.convert_mfi_to_dilution_no_bounds
                        Convert mfi to dilution using known standard
                        curve fit and no bounds
.convert_mfi_to_dilution_no_lower_bound
                        Convert mfi to dilution using known standard
                        curve fit and no lower bound
.extract_luminex_sections
                        Helper function to process luminex sections
.fit_standard_curve     Fit a standard curve to known mfi and dilution
                        values.
.magpix_version_config
                        Helper function to identify Magpix version
.merge_mfitorau         Helper function to add Sample IDs to output.
.post_process_bioplex   Helper function to process bioplex sections
.post_process_luminex   Helper function to process luminex into
                        master_list
.process_antigen_loglog
                        Helper function to fit a 5-parameter logistic
                        standard curve to dilutions
.read_luminex_file      Helper function to read raw luminex files
.relabel_columns        Relabel column names to Standardised Naming
                        Convention
.setup_mfitorau_inputs
                        Helper function to set up MFI to RAU function
MFItoRAU                Median Fluorescent Intensity (MFI) to Relative
                        Antibody Units (RAU) conversion
MFItoRAU_Adj            Median Fluorescent Intensity (MFI) to Relative
                        Antibody Units (RAU) conversion based on other
                        standard
MFItoRAU_LDH            Median Fluorescent Intensity (MFI) to Relative
                        Antibody Units (RAU) conversion for LDH
MFItoRAU_Pk             Median Fluorescent Intensity (MFI) to Relative
                        Antibody Units (RAU) conversion for Pk proteins
MFItoRAU_Plasmo         Median Fluorescent Intensity (MFI) to Relative
                        Antibody Units (RAU) conversion for Pk/Pf/Pv
                        Master Function
classifyResults         Random Forest Classification
example_BioPlex_PvLDH_plate1_xlsx
                        Example Serological Dataset: Bioplex PvLDH
                        Plate 1
example_BioPlex_plate1_xlsx
                        Example Serological Dataset: Bioplex Plate 1
example_BioPlex_plate2_xlsx
                        Example Serological Dataset: Bioplex Plate 2
example_BioPlex_plate3_xlsx
                        Example Serological Dataset: Bioplex Plate 3
example_MAGPIX_pk_10std_plate1_csv
                        Example Serological Dataset: MAGPIX Plate 1 Pk
                        Analysis 10-Point Standard Curve A dataset
                        containing raw MFI values and metadata from a
                        sample plate run (MAGPIX).
example_MAGPIX_pk_10std_plate2_csv
                        Example Serological Dataset: MAGPIX Plate 2 Pk
                        Analysis 10-Point Standard Curve
example_MAGPIX_pk_5std_plate1_csv
                        Example Serological Dataset: MAGPIX Plate 1 Pk
                        Analysis 5-Point Standard Curve A dataset
                        containing raw MFI values and metadata from a
                        sample plate run (MAGPIX).
example_MAGPIX_pk_5std_plate2_csv
                        Example Serological Dataset: MAGPIX Plate 2 Pk
                        Analysis 5-Point Standard Curve
example_MAGPIX_plate1_csv
                        Example Serological Dataset: MAGPIX Plate 1 A
                        dataset containing raw MFI values and metadata
                        from a sample plate run (MAGPIX).
example_MAGPIX_plate2_csv
                        Example Serological Dataset: MAGPIX Plate 2
example_MAGPIX_plate3_csv
                        Example Serological Dataset: MAGPIX Plate 3
example_platelayout_1_xlsx
                        96 Well Plate Example Layout
example_platelayout_pk_10std_xlsx
                        10-Point Standard Curve Example Plate Layout
example_platelayout_pk_5std_xlsx
                        5-Point Standard Curve Example Plate Layout
getAntigenCounts        Get Count Data for each Antigen from the Raw
                        Median Fluorescent Intensity
getCounts               Get Count Data from Raw Median Fluorescent
                        Intensity
getCountsQC             Get All Counts Data
getGithubRelease        Get GitHub Version
getPlateLayout          Find and create a master plate layout file
getRepeats              Check Beads to Repeat
getSampleID             Get SampleID from Plate Layout
makeCard                Make Card in Fluent UI
plotBeadCounts          Plot Bead Counts per Plate per Antigen
plotBlanks              Plot Raw Median Fluorescent Intensity Blanks
                        Data
plotBoxPlotClassification
                        Plot Classification
plotCounts              Plot Bead Count Data
plotMFI                 Median Fluorescent Intensity (MFI) Box Plots
plotModel               Plot the Median Fluorescent Intensity (MFI) to
                        Relative Antibody Units (RAU) Results Data
plotModel_Adj           Plot the Median Fluorescent Intensity (MFI) to
                        Relative Antibody Units (RAU) Results Data
                        based on ETH standard
plotRAU                 Relative Antibody Unit (RAU) Box Plots
plotStds                Plot Raw Median Fluorescent Intensity of
                        Standard Curve Data
plotStds_PkPfPv         Plot Raw Median Fluorescent Intensity of
                        Pk/Pf/Pv Standard Curve Data
plotStds_all            Plot Raw Median Fluorescent Intensity of
                        Standard Curve Data
processCounts           Process Counts from Raw Serological Data file
processPkPfPv           Processing Serological Data for Pk/Pf/Pv MFI to
                        RAU conversion
readPlateLayout         Read Plate Layout/s
readSeroData            Read Raw Serological Data
renderClassificationTable
                        All Classification Data
renderDetailsList       Create a Fluent UI Table
renderQCReport          Generate QC PDF Report
renderReport            Render Markdown report
renderTwoCols           Create two columns in Fluent UI
runLDHPipeline          Run LDH Pipeline from Start to End
runPlasmoPipeline       Run Pk/Pf/Pv Data Analysis Pipeline from Start
                        to End
runPvSeroPipeline       Run PvSero Pipeline from Start to End
runQC                   Run Quality Control Pipeline
