calculate_sar_quick     Quick Secondary Attack Rate (SAR) Calculator
calculate_sar_robust    Calculate Secondary Attack Rate (SAR)
fill_missing_viral_data
                        Fill Missing Viral Data (Cycle Threshold or
                        Log10) Based on Episode Start
fit_household_model     Fit Household Transmission Model
plot_covariate_effects
                        Plot Covariate Coefficients (Forest Plot)
plot_epidemic_curve     Plot Dual-Axis Epidemic Curve (Binned)
plot_household_timeline
                        Plot Household Timeline with Person-Centric
                        Reinfections
plot_posterior_distributions
                        Plot Posterior Distributions (Phi and Kappa)
prepare_stan_data       Prepare Data for Stan Model
reconstruct_transmission_chains
                        Reconstruct Transmission Chains
simulate_multiple_households_comm
                        Simulate Household Transmission
summarize_attack_rates
                        Summarize Attack Rates and Reinfections
