.eem_csv                Import EEMs from generic csv files.
.trans_parafac          Add data of a PARAFAC model derived from
                        multiway from EEMs
A_missing               Calculate the sample loadings for samples not
                        involved in model building
abs_blcor               Baseline correction for absorbance data
abs_fit_slope           Fit absorbance data to exponential curve. 'drm'
                        is used for the fitting process.
abs_parms               Calculating slopes and slope ratios of a data
                        frame of absorbance data.
absorbance_read         Reading absorbance data from txt and csv files.
as.data.frame.eem       Converting EEM data from class eem to
                        data.frame.
eem2array               Data from an eemlist is transformed into an
                        array
eem_absdil              Multiply absorbance data according to the
                        dilution and remove absorbance from samples
                        where undiluted data is used.
eem_apply               Applying functions on EEMs
eem_checkdata           Check your EEM, absorption and metadata before
                        processing
eem_checksize           Check size of EEMs
eem_corrections         Return names of samples where certain
                        corrections are missing.
eem_csv                 Importer function for generic csv files to be
                        used with eem_read().
eem_csv2                Importer function for generic csv files to be
                        used with eem_read().
eem_dilcorr             Create table how samples should be corrected
                        because of dilution
eem_dilution            Modifying fluorescence data according to
                        dilution.
eem_duplicates          Check for duplicate sample names
eem_easy                Opens an R markdown template for an easy and
                        userfriendly analysis of EEM data.
eem_eemdil              Correct names of EEM samples to match undiluted
                        absorbance data.
eem_exclude             Exclude complete wavelengths or samples form
                        data set
eem_extend2largest      EEM sample data is extended to include all
                        wavelengths in all samples
eem_getextreme          Determines the the biggest range of EEM
                        spectrum where data is available from each
                        sample.
eem_hitachi             Importer function for Hitachi F-7000 txt files
                        to be used with eem_read().
eem_ife_correction      Wrapper function to allow
                        eem_inner_filter_effect (eemR) handling
                        different cuvette lengths.
eem_import_dir          Load all eemlist obects saved in different
                        Rdata or RDa files in a folder.
eem_interp              Missing values are interpolated within EEM data
eem_is.na               Check for NAs in EEM data
eem_list                15 fluorescence samples from drEEM used for
                        examples.
eem_list_outliers       2 fluorescence samples from drEEM that were
                        excluded as outliers from the PARAFAC model.
eem_load_dreem          Load original data from the drEEM tutorial and
                        return it as eemlist
eem_matmult             Multiply all EEMs with a matrix
eem_metatemplate        Create table that contains sample names and
                        locations of files.
eem_name_replace        Replace matched patterns in sample names
eem_overview_plot       Plot fluorescence data from several samples
                        split into several plots.
eem_parafac             Runs a PARAFAC analysis on EEM data
eem_raman_area          Calculate raman area of EEM samples
eem_raman_normalisation2
                        Wrapper function to eem_raman_normalisation
                        (eemR).
eem_range               Cut EEM data matching a given wavelength range
eem_read_csv            Import EEMs from generic csv tables
                        (deprecated)
eem_red2smallest        Remove wavelengths, that are missing in at
                        least one sample form the whole set.
eem_rem_scat            Remove Raman and Rayleigh scattering in
                        fluorescence data
eem_scale_ext           Determine the range of fluorescence values in a
                        set of samples
eem_setNA               set parts of specific samples to NA and
                        optionally interpolate these parts
eem_smooth              Smooth fluorescence data by calculating rolling
                        mean along excitation wavelengths.
eem_spectral_cor        Multiply EEMs with spectral correction vectors
                        (Emission and Excitation)
eempf4analysis          Create table of PARAFAC components and
                        (optionally) EEM peaks and indices as well as
                        absorbance slope parameters.
eempf_OF_upload         Upload PARAFAC models to openfluor.org
eempf_bindxc            Combining extracted components of PARAFAC
                        models
eempf_comp_load_plot    Plot components from a PARAFAC model
eempf_comp_mat          Extract EEM matrix for single components
                        determined in the PARAFAC analysis
eempf_comp_names        Extract names from PARAFAC model components
eempf_comp_names<-      Set names of PARAFAC components
eempf_compare           Plot a set of PARAFAC models to compare the
                        single components
eempf_comps3D           3D plots of PARAFAC components
eempf_convergence       Extract modelling information from a PARAFAC
                        model.
eempf_corcondia         Calculate the core consistancy of an EEM
                        PARAFAC model
eempf_corplot           Plot correlations of components in samples
eempf_cortable          Calculating correlations between the component
                        loadings in all samples (C-Modes).
eempf_eemqual           Calculating EEMqual which is an indicator of a
                        PARAFAC model's quality
eempf_excomp            Extracting components of a PARAFAC model
eempf_export            Create one table containing the PARAFAC models
                        factors and optionally exporting it to csv or
                        txt
eempf_fits              Fits vs. components of PARAFAC models are
                        plotted
eempf_leverage          Calculate the leverage of each emission and
                        excitation wavelength and each sample from a
                        single PARAFAC model
eempf_leverage_data     Combine leverages into one data frame and add
                        optional labels.
eempf_leverage_ident    Plot leverage of emission wavelengths,
                        excitation wavelengths and samples.
eempf_leverage_plot     Plot leverage of emission wavelengths,
                        excitation wavelengths and samples.
eempf_load_plot         Plot amount of each component in each sample as
                        bar plot
eempf_mleverage         Calculate the leverage of each emission and
                        excitation wavelength and each sample from a
                        list of PARAFAC models
eempf_openfluor         Write out PARAFAC components to submit to
                        openfluor.org.
eempf_plot_comps        Plot all components of PARAFAC models
eempf_plot_ssccheck     Plot results from an SSC check
eempf_reorder           Reorder PARAFAC components
eempf_report            Create a html report of a PARAFAC analysis
eempf_rescaleBC         Rescale B and C modes of PARAFAC model
eempf_residuals         Calculate residuals of EEM data according to a
                        certain model
eempf_residuals_metrics
                        Calculate residual metrics from a PARAFAC model
eempf_residuals_plot    Plot samples by means of whole sample, each
                        single component and residuum
eempf_ssc               Calculate the shift-and shape-sensitive
                        congruence (SSC) between model components
eempf_ssccheck          Check SSCs between different models or
                        initialisations of one model
eempf_varimp            Calculate the importance of each component.
ggeem                   EEM spectra plotted with ggplot2
list_join               Full join of a list of data frames.
maxlines                Extract data from emission and excitation
                        wavelengths of the components of a PARAFAC
                        model (scaled B- and C-modes)
norm2A                  Compensate for normalisation in C-modes
norm_array              Normalise 3-dimensional array in first and
                        second dimension
parafac_conv            Calculate a PARAFAC model similar to and using
                        'parafac'.
pf1                     PARAFAC model, see vignette, unconstrained
pf1n                    PARAFAC model, see vignette, non-negative
                        constraints
pf2                     PARAFAC model, see vignette, non-negative
                        constraints, normalised
pf3                     PARAFAC model, see vignette, non-negative
                        constraints, normalised, outliers removed
pf4                     PARAFAC model, see vignette, non-negative
                        constraints, normalised, outliers removed, high
                        accuarcy
sh                      result from PARAFAC split-half analysis,
                        periodic data split
splithalf               Running a Split-Half analysis on a PARAFAC
                        model
splithalf_plot          Plot results from a splithalf analysis
splithalf_splits        Extracting a list of sample names in each
                        subsample from a splithalf analysis
splithalf_tcc           Extracting TCC values from a splithalf analysis
ssc                     Calculate the shift-and shape-sensitive
                        congruence (SSC) between two matrices
ssc_max                 Calculate the combination of components giving
                        the maximum of geometric mean of TCCs
tcc                     Caluclate Tucker's Congruence Coefficient of
                        PARAFAC components
tcc_find_pairs          Reorders components of different PARAFAC models
                        according to best fit (TCC)
