assemble	01-TCGA-ESCA-data
barplot,plasma-method	04-plasma-class
combineAllWeights	06-CombinedWeights-class
CombinedWeights	06-CombinedWeights-class
CombinedWeights-class	06-CombinedWeights-class
Contribution	05-Contribution-class
Contribution-class	05-Contribution-class
fitCoxModels	03-manyCoxModels
fitSingleModel	02-fitCoxModel
getAllWeights	05-Contribution-class
getCompositeWeights	05-Contribution-class
getFinalWeights	05-Contribution-class
getSizes	03-manyCoxModels
getTop	05-Contribution-class
heat	05-Contribution-class
heat,Contribution-method	05-Contribution-class
image,CombinedWeights-method	06-CombinedWeights-class
image,Contribution-method	05-Contribution-class
interpret	06-CombinedWeights-class
loadESCAdata	01-TCGA-ESCA-data
loadLUSCdata	01-TCGA-ESCA-data
m450info	01-TCGA-ESCA-data
meanModeImputer	00-imputation
mirESCA	07-esca-type-data
MultiOmics	01-MultiOmics
MultiOmics-class	01-MultiOmics
MultiplePLSCoxModels	03-manyCoxModels
MultiplePLSCoxModels-class	03-manyCoxModels
Outcome	01-TCGA-ESCA-data
pickSignificant	05-Contribution-class
plasma	04-plasma-class
plasma-class	04-plasma-class
plasmaEnv	01-TCGA-ESCA-data
plasmaPredictions	04-plasmaPredictions-class
plasmaPredictions-class	04-plasmaPredictions-class
plot,MultiOmics,missing-method	01-MultiOmics
plot,MultiplePLSCoxModels,missing-method	03-manyCoxModels
plot,plasma,missing-method	04-plasma-class
plot,plasmaPredictions,missing-method	04-plasmaPredictions-class
plot,SingleModel,missing-method	02-fitCoxModel
predict,MultiplePLSCoxModels-method	03-manyCoxModels
predict,plasma-method	04-plasma-class
predict,SingleModel-method	02-fitCoxModel
prepareMultiOmics	01-MultiOmics
samplingImputer	00-imputation
SingleModel-class	02-fitCoxModel
stdize	06-CombinedWeights-class
summary,CombinedWeights-method	06-CombinedWeights-class
summary,Contribution-method	05-Contribution-class
summary,MultiOmics-method	01-MultiOmics
summary,MultiplePLSCoxModels-method	03-manyCoxModels
summary,plasma-method	04-plasma-class
summary,SingleModel-method	02-fitCoxModel
TCGA-ESCA	01-TCGA-ESCA-data
TCGA-LUSC	01-TCGA-ESCA-data
tfESCA	07-esca-type-data
validMultiOmics	01-MultiOmics
validMultipleCoxModels	03-manyCoxModels
[,Contribution,ANY,ANY,ANY-method	05-Contribution-class
[,MultiOmics,ANY,ANY,ANY-method	01-MultiOmics
[,MultiplePLSCoxModels,ANY,ANY,ANY-method	03-manyCoxModels
